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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013szx_A_U1_U2AAAAA00260.35 AA00
023szx_A_U2_G3AAAAA00600.26 AA00
033szx_A_G3_G4AAAAA04880.22 AA04
043szx_A_G4_G5AAAAA00670.21 AA00
053szx_A_G5_C6AAAAA00820.15 AA00
063szx_A_C6_C7AAAAA00820.12 AA00
073szx_A_C7_U8AAAAA04890.18 AA04
083szx_A_U8_G9AAAAA00930.14 AA00
093szx_A_G9_C10AAAAA08870.22 AA08
103szx_A_C10_U11AAAAA03850.20 AA03
113szx_A_U11_G12AAAAA00730.15 AA00
123szx_A_G12_C13AAAAA00250.23 AA00
133szx_A_C13_U14AAAAA00740.20 AA00
143szx_A_U14_G15AAAAA00780.12 AA00
153szx_A_G15_G16AAAAA00820.18 AA00
163szx_A_G16_U17AAAAA03920.18 AA03
173szx_A_U17_C18AAAAA00750.16 AA00
183szx_A_C18_C19AAAAA00840.18 AA00
193szx_B_U1_U2AAAAA00610.21 AA00
203szx_B_U2_G3AAAAA00840.18 AA00
213szx_B_G3_G4AAAAA00830.18 AA00
223szx_B_G4_G5AAAAA00700.23 AA00
233szx_B_G5_C6AAAAA08840.16 AA08
243szx_B_C6_C7AAAAA04870.28 AA04
253szx_B_C7_U8AAAAA00830.21 AA00
263szx_B_U8_G9AAAAA00900.15 AA00
273szx_B_G9_C10AAAAA00850.12 AA00
283szx_B_C10_U11AAAAA00750.19 AA00
293szx_B_U11_G12AAAAA00920.15 AA00
303szx_B_G12_C13AAAAA08830.23 AA08
313szx_B_C13_U14AAAAA08560.37 AA08
323szx_B_U14_G15AAAAA00660.30 AA00
333szx_B_G15_G16AAAAA00450.17 AA00
343szx_B_G16_U17AAAAA00780.13 AA00
353szx_B_U17_C18AAAAA00690.17 AA00
363szx_B_C18_C19AAAAA00790.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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