Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of RNA:DNA dodecamer corresponding to HIV-1 polypurine tract, at 1.6 A resolution.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3ssf_A_U.A1_A.A2 | AAA | AA00 | 12 | 0.48 |
| 02 | 3ssf_A_U.B1_A.B2 | NAN | NANT | 0 | 0.59 |
| 03 | 3ssf_A_A.A2_A3 | AAA | AA00 | 79 | 0.24 |
| 04 | 3ssf_A_A.B2_A3 | AAA | AA00 | 80 | 0.21 |
| 05 | 3ssf_A_A3_A4 | AAA | AA00 | 76 | 0.18 |
| 06 | 3ssf_A_A4_A5 | AAA | AA00 | 84 | 0.12 |
| 07 | 3ssf_A_A5_G.A6 | AAA | AA00 | 96 | 0.16 |
| 08 | 3ssf_A_A5_G.B6 | AAA | AA00 | 65 | 0.13 |
| 09 | 3ssf_A_G.A6_A.A7 | AAA | AA00 | 84 | 0.20 |
| 10 | 3ssf_A_G.B6_A.B7 | AAA | AA08 | 64 | 0.27 |
| 11 | 3ssf_A_A.A7_A.A8 | AAw | AA01 | 51 | 0.32 |
| 12 | 3ssf_A_A.B7_A.B8 | AAA | AA00 | 83 | 0.18 |
| 13 | 3ssf_A_A.A8_A9 | AAA | AA00 | 92 | 0.13 |
| 14 | 3ssf_A_A.B8_A9 | AAA | AA00 | 95 | 0.10 |
| 15 | 3ssf_A_A9_A10 | AAA | AA00 | 89 | 0.10 |
| 16 | 3ssf_A_A10_G11 | AAA | AA00 | 83 | 0.12 |
| 17 | 3ssf_A_G11_G12 | AAA | AA00 | 95 | 0.13 |
| 18 | 3ssf_B_DC13_DC14 | AAA | AA00 | 91 | 0.17 |
| 19 | 3ssf_B_DC14_DT15 | AAA | AA00 | 95 | 0.12 |
| 20 | 3ssf_B_DT15_DT16 | AAA | AA00 | 90 | 0.13 |
| 21 | 3ssf_B_DT16_DT17 | AAA | AA00 | 83 | 0.15 |
| 22 | 3ssf_B_DT17_DT18 | AAA | AA00 | 68 | 0.25 |
| 23 | 3ssf_B_DT18_DC19 | AAA | AA00 | 84 | 0.23 |
| 24 | 3ssf_B_DC19_DT20 | AAA | AA00 | 91 | 0.18 |
| 25 | 3ssf_B_DT20_DT21 | AAA | AA00 | 85 | 0.19 |
| 26 | 3ssf_B_DT21_DT22 | A-B | AB01 | 71 | 0.27 |
| 27 | 3ssf_B_DT22_DT23 | B-A | BA05 | 83 | 0.12 |
| 28 | 3ssf_B_DT23_DA24 | NAN | NANT | 0 | 0.69 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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