Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RB69 DNA Polymerase Ternary Complex with dUpCpp Opposite dA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3sq1_T_DT1_DC2 | OPN | OP21 | 85 | 0.17 |
| 02 | 3sq1_T_DC2_DG3 | NAN | NANT | 0 | 0.50 |
| 03 | 3sq1_T_DG3_DA4 | NAN | NANT | 0 | 1.39 |
| 04 | 3sq1_T_DA4_DG5 | AAA | AA00 | 86 | 0.16 |
| 05 | 3sq1_T_DG5_DT6 | A-B | AB05 | 78 | 0.28 |
| 06 | 3sq1_T_DT6_DA7 | BBB | BB00 | 70 | 0.27 |
| 07 | 3sq1_T_DA7_DA8 | BBB | BB00 | 78 | 0.27 |
| 08 | 3sq1_T_DA8_DG9 | B-A | BA08 | 89 | 0.28 |
| 09 | 3sq1_T_DG9_DC10 | A-B | AB01 | 67 | 0.24 |
| 10 | 3sq1_T_DC10_DA11 | BBB | BB00 | 71 | 0.30 |
| 11 | 3sq1_T_DA11_DG12 | B-A | BA05 | 82 | 0.19 |
| 12 | 3sq1_T_DG12_DT13 | BBB | BB00 | 38 | 0.35 |
| 13 | 3sq1_T_DT13_DC14 | BBB | BB00 | 61 | 0.24 |
| 14 | 3sq1_T_DC14_DC15 | BBB | BB00 | 73 | 0.24 |
| 15 | 3sq1_T_DC15_DG16 | B12 | BB04 | 77 | 0.26 |
| 16 | 3sq1_T_DG16_DC17 | BBB | BB00 | 76 | 0.35 |
| 17 | 3sq1_T_DC17_DG18 | NAN | NANT | 0 | 1.21 |
| 18 | 3sq1_P_DG103_DC104 | BBB | BB00 | 26 | 0.31 |
| 19 | 3sq1_P_DC104_DG105 | B-A | BA08 | 66 | 0.32 |
| 20 | 3sq1_P_DG105_DG106 | A-B | AB02 | 92 | 0.09 |
| 21 | 3sq1_P_DG106_DA107 | BBB | BB00 | 93 | 0.16 |
| 22 | 3sq1_P_DA107_DC108 | B-A | BA01 | 49 | 0.30 |
| 23 | 3sq1_P_DC108_DT109 | A-B | AB01 | 75 | 0.31 |
| 24 | 3sq1_P_DT109_DG110 | BBB | BB01 | 85 | 0.18 |
| 25 | 3sq1_P_DG110_DC111 | B-A | BA05 | 88 | 0.21 |
| 26 | 3sq1_P_DC111_DT112 | BBB | BB01 | 64 | 0.20 |
| 27 | 3sq1_P_DT112_DT113 | B-A | BA08 | 38 | 0.39 |
| 28 | 3sq1_P_DT113_DA114 | BBw | BB16 | 19 | 0.76 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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