Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of aprataxin ortholog Hnt3 in complex with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3spd_E_DT1_DA2 | NAN | NANT | 0 | 1.81 |
| 02 | 3spd_E_DA2_DT3 | A-B | AB04 | 54 | 0.37 |
| 03 | 3spd_E_DT3_DT4 | BBB | BB00 | 73 | 0.25 |
| 04 | 3spd_E_DT4_DC5 | BBB | BB00 | 74 | 0.21 |
| 05 | 3spd_E_DC5_DC6 | BBB | BB00 | 59 | 0.19 |
| 06 | 3spd_E_DC6_DG7 | BBB | BB00 | 73 | 0.18 |
| 07 | 3spd_E_DG7_DA8 | B12 | BB04 | 87 | 0.13 |
| 08 | 3spd_E_DA8_DT9 | BBB | BB01 | 88 | 0.10 |
| 09 | 3spd_E_DT9_DA10 | BBB | BB00 | 78 | 0.20 |
| 10 | 3spd_E_DA10_DG11 | BBB | BB00 | 77 | 0.29 |
| 11 | 3spd_E_DG11_DT12 | NAN | NANT | 0 | 0.52 |
| 12 | 3spd_E_DT12_DG13 | miB | BB14 | 74 | 0.33 |
| 13 | 3spd_E_DG13_DA14 | BBB | BB00 | 85 | 0.15 |
| 14 | 3spd_F_DG1_DT2 | NAN | NANT | 0 | 1.84 |
| 15 | 3spd_F_DT2_DC3 | A-B | AB04 | 45 | 0.39 |
| 16 | 3spd_F_DC3_DA4 | BBB | BB00 | 75 | 0.24 |
| 17 | 3spd_F_DA4_DC5 | BBB | BB00 | 79 | 0.29 |
| 18 | 3spd_F_DC5_DT6 | BBB | BB00 | 30 | 0.18 |
| 19 | 3spd_F_DT6_DA7 | BBB | BB00 | 52 | 0.20 |
| 20 | 3spd_F_DA7_DT8 | B12 | BB04 | 59 | 0.21 |
| 21 | 3spd_F_DT8_DC9 | BBB | BB01 | 81 | 0.15 |
| 22 | 3spd_F_DC9_DG10 | BBB | BB01 | 23 | 0.29 |
| 23 | 3spd_F_DG10_DG11 | NAN | NANT | 0 | 0.52 |
| 24 | 3spd_F_DG11_DA12 | BBB | BB00 | 47 | 0.25 |
| 25 | 3spd_F_DA12_DA13 | BBB | BB00 | 79 | 0.19 |
| 26 | 3spd_F_DA13_DT14 | BBB | BB00 | 42 | 0.22 |
| 27 | 3spd_G_DT1_DA2 | NAN | NANT | 0 | 1.39 |
| 28 | 3spd_G_DA2_DT3 | A-B | AB04 | 55 | 0.36 |
| 29 | 3spd_G_DT3_DT4 | BBB | BB01 | 77 | 0.23 |
| 30 | 3spd_G_DT4_DC5 | BBB | BB00 | 45 | 0.24 |
| 31 | 3spd_G_DC5_DC6 | BBB | BB00 | 60 | 0.21 |
| 32 | 3spd_G_DC6_DG7 | BBB | BB00 | 82 | 0.14 |
| 33 | 3spd_G_DG7_DA8 | B12 | BB04 | 91 | 0.13 |
| 34 | 3spd_G_DA8_DT9 | BBB | BB00 | 77 | 0.14 |
| 35 | 3spd_G_DT9_DA10 | BBB | BB00 | 68 | 0.22 |
| 36 | 3spd_G_DA10_DG11 | BBB | BB00 | 88 | 0.25 |
| 37 | 3spd_G_DG11_DT12 | B-A | BA05 | 6 | 0.32 |
| 38 | 3spd_G_DT12_DG13 | miB | BB14 | 73 | 0.31 |
| 39 | 3spd_G_DG13_DA14 | BBB | BB00 | 87 | 0.14 |
| 40 | 3spd_H_DG1_DT2 | NAN | NANT | 0 | 1.85 |
| 41 | 3spd_H_DT2_DC3 | A-B | AB05 | 47 | 0.19 |
| 42 | 3spd_H_DC3_DA4 | BBB | BB00 | 83 | 0.23 |
| 43 | 3spd_H_DA4_DC5 | BBB | BB00 | 76 | 0.31 |
| 44 | 3spd_H_DC5_DT6 | BBB | BB00 | 35 | 0.20 |
| 45 | 3spd_H_DT6_DA7 | BBB | BB00 | 54 | 0.21 |
| 46 | 3spd_H_DA7_DT8 | B12 | BB04 | 59 | 0.21 |
| 47 | 3spd_H_DT8_DC9 | BBB | BB01 | 85 | 0.14 |
| 48 | 3spd_H_DC9_DG10 | BBB | BB00 | 69 | 0.25 |
| 49 | 3spd_H_DG10_DG11 | BBB | BB00 | 88 | 0.25 |
| 50 | 3spd_H_DG11_DA12 | BBB | BB00 | 65 | 0.19 |
| 51 | 3spd_H_DA12_DA13 | BBB | BB00 | 75 | 0.17 |
| 52 | 3spd_H_DA13_DT14 | BBB | BB00 | 41 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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