DNATCO v4.1: results

Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cobalt Hexammine soak

Results of the assignment of 130 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3skr_A_GTP23_G24	NAN	NANT	0	0.61	AA06
002	3skr_A_G24_C25	NAN	NANT	0	0.68	AA10
003	3skr_A_C25_U26	AAA	AA08	7	0.49	AA08
004	3skr_A_U26_U27	AAA	AA08	83	0.25	AA08
005	3skr_A_U27_A28	AAA	AA00	82	0.14	AA00
006	3skr_A_A28_U29	AAA	AA00	78	0.19	AA00
007	3skr_A_U29_A30	AAA	AA04	78	0.25	AA04
008	3skr_A_A30_C31	NAN	NANT	0	0.84	OP04
009	3skr_A_C31_A32	NAN	NANT	0	0.81	BB20
010	3skr_A_A32_G33	NAN	NANT	0	1.32	OP23
011	3skr_A_G33_G34	NAN	NANT	0	0.35	OP26
012	3skr_A_G34_G35	AAA	AA00	44	0.26	AA00
013	3skr_A_G35_U36	AAA	AA00	73	0.17	AA00
014	3skr_A_U36_A37	AAA	AA00	70	0.17	AA00
015	3skr_A_A37_G38	AAA	AA08	51	0.29	AA08
016	3skr_A_G38_C39	AAA	AA08	73	0.21	AA08
017	3skr_A_C39_A40	AAA	AA08	86	0.19	AA08
018	3skr_A_A40_U41	A-B	AB04	72	0.23	AB04
019	3skr_A_U41_A42	NAN	NANT	0	1.22	OP24
020	3skr_A_A42_A43	A-B	AB04	49	0.36	AB04
021	3skr_A_A43_U44	NAN	NANT	0	0.67	OP21
022	3skr_A_U44_G45	NAN	NANT	0	0.39	OP11
023	3skr_A_G45_G46	AAA	AA08	67	0.38	AA08
024	3skr_A_G46_G47	OPN	OP01	52	0.39	OP01
025	3skr_A_G47_C48	NAN	NANT	0	0.39	AA01
026	3skr_A_C48_U49	AAA	AA08	76	0.23	AA08
027	3skr_A_U49_A50	AAA	AA04	87	0.25	AA04
028	3skr_A_A50_C51	AAA	AA00	51	0.25	AA00
029	3skr_A_C51_U52	AAA	AA08	79	0.27	AA08
030	3skr_A_U52_G53	AAA	AA04	72	0.33	AA04
031	3skr_A_G53_A54	OPN	OP06	51	1.23	OP06
032	3skr_A_A54_C55	AAA	AA00	57	0.33	AA00
033	3skr_A_C55_C56	NAN	NANT	0	0.64	ZZ01
034	3skr_A_C56_C57	NAN	NANT	0	1.37	BA10
035	3skr_A_C57_C58	NAN	NANT	0	0.79	AA04
036	3skr_A_C58_G59	AAw	AA06	63	0.59	AA06
037	3skr_A_G59_C60	AAw	AA10	14	0.47	AA10
038	3skr_A_C60_C61	NAN	NANT	0	0.63	OP01
039	3skr_A_C61_U62	AAA	AA08	51	0.27	AA08
040	3skr_A_U62_U63	AAA	AA00	57	0.30	AA00
041	3skr_A_U63_C64	NAN	NANT	0	0.46	AA10
042	3skr_A_C64_A65	AAA	AA08	31	0.40	AA08
043	3skr_A_A65_A66	AAA	AA08	72	0.20	AA08
044	3skr_A_A66_A67	AAA	AA00	66	0.23	AA00
045	3skr_A_A67_C68	AAw	AA10	25	0.28	AA10
046	3skr_A_C68_C69	A-B	AB04	40	0.35	AB04
047	3skr_A_C69_U70	NAN	NANT	0	0.72	OP13
048	3skr_A_U70_A71	NAN	NANT	0	0.98	OP06
049	3skr_A_A71_U72	NAN	NANT	0	1.74	OP19
050	3skr_A_U72_U73	NAN	NANT	0	0.76	BA17
051	3skr_A_U73_U74	AAA	AA04	74	0.27	AA04
052	3skr_A_U74_G75	AAA	AA00	65	0.22	AA00
053	3skr_A_G75_G76	AAA	AA04	80	0.31	AA04
054	3skr_A_G76_A77	AAA	AA03	12	0.30	AA03
055	3skr_A_A77_G78	AAw	AA01	33	0.32	AA01
056	3skr_A_G78_A79	AAA	AA08	61	0.27	AA08
057	3skr_A_A79_C80	AAA	AA00	71	0.31	AA00
058	3skr_A_C80_U81	AAA	AA04	79	0.30	AA04
059	3skr_A_U81_A82	NAN	NANT	0	0.38	AA03
060	3skr_A_A82_U83	AAA	AA00	60	0.25	AA00
061	3skr_A_U83_A84	AAA	AA00	86	0.17	AA00
062	3skr_A_A84_A85	AAA	AA04	84	0.20	AA04
063	3skr_A_A85_G86	AAA	AA08	93	0.21	AA08
064	3skr_A_G86_U87	AAA	AA08	88	0.24	AA08
065	3skr_A_U87_CCC88	NAN	NANT	0	0.38	AA01
066	3skr_B_GTP23_G24	AAw	AA01	6	0.52	AA01
067	3skr_B_G24_C25	AAA	AA08	40	0.51	AA08
068	3skr_B_C25_U26	NAN	NANT	0	0.34	AA03
069	3skr_B_U26_U27	AAA	AA00	74	0.28	AA00
070	3skr_B_U27_A28	AAA	AA00	79	0.19	AA00
071	3skr_B_A28_U29	AAA	AA00	68	0.16	AA00
072	3skr_B_U29_A30	AAA	AA00	14	0.37	AA00
073	3skr_B_A30_C31	NAN	NANT	0	0.79	OP04
074	3skr_B_C31_A32	NAN	NANT	0	1.48	OP26
075	3skr_B_A32_G33	NAN	NANT	0	1.26	IC04
076	3skr_B_G33_G34	NAN	NANT	0	0.64	OP26
077	3skr_B_G34_G35	AAA	AA08	19	0.38	AA08
078	3skr_B_G35_U36	AAA	AA00	72	0.28	AA00
079	3skr_B_U36_A37	AAA	AA08	82	0.30	AA08
080	3skr_B_A37_G38	AAw	AA10	47	0.43	AA10
081	3skr_B_G38_C39	NAN	NANT	0	0.57	AA04
082	3skr_B_C39_A40	AAA	AA08	41	0.41	AA08
083	3skr_B_A40_U41	NAN	NANT	0	0.47	AB04
084	3skr_B_U41_A42	NAN	NANT	0	1.26	BB14
085	3skr_B_A42_A43	NAN	NANT	0	0.46	AB04
086	3skr_B_A43_U44	NAN	NANT	0	0.93	OP21
087	3skr_B_U44_G45	NAN	NANT	0	0.60	OP11
088	3skr_B_G45_G46	AAA	AA00	61	0.31	AA00
089	3skr_B_G46_G47	OPN	OP01	65	0.28	OP01
090	3skr_B_G47_C48	AAA	AA00	49	0.25	AA00
091	3skr_B_C48_U49	AAA	AA00	65	0.20	AA00
092	3skr_B_U49_A50	AAw	AA11	78	0.20	AA11
093	3skr_B_A50_C51	NAN	NANT	0	0.66	AA04
094	3skr_B_C51_U52	AAA	AA00	48	0.32	AA00
095	3skr_B_U52_G53	AAA	AA00	74	0.28	AA00
096	3skr_B_G53_A54	OPN	OP06	25	1.19	OP06
097	3skr_B_A54_C55	AAA	AA08	47	0.30	AA08
098	3skr_B_C55_C56	NAN	NANT	0	0.54	ZZ01
099	3skr_B_C56_C57	NAN	NANT	0	1.29	AB02
100	3skr_B_C57_C58	AAA	AA04	51	0.51	AA04
101	3skr_B_C58_G59	AAw	AA01	43	0.38	AA01
102	3skr_B_G59_C60	AAA	AA00	55	0.43	AA00
103	3skr_B_C60_C61	NAN	NANT	0	0.54	OP01
104	3skr_B_C61_U62	AAu	AA12	66	0.33	AA12
105	3skr_B_U62_U63	AAA	AA00	41	0.24	AA00
106	3skr_B_U63_C64	NAN	NANT	0	0.35	AA03
107	3skr_B_C64_A65	AAA	AA00	74	0.30	AA00
108	3skr_B_A65_A66	AAA	AA00	75	0.19	AA00
109	3skr_B_A66_A67	AAA	AA04	42	0.33	AA04
110	3skr_B_A67_C68	AAA	AA08	45	0.31	AA08
111	3skr_B_C68_C69	A-B	AB04	37	0.42	AB04
112	3skr_B_C69_U70	NAN	NANT	0	1.51	OP17
113	3skr_B_U70_A71	NAN	NANT	0	0.93	OP06
114	3skr_B_A71_U72	NAN	NANT	0	1.79	OP19
115	3skr_B_U72_U73	NAN	NANT	0	0.40	BA08
116	3skr_B_U73_U74	AAA	AA00	57	0.23	AA00
117	3skr_B_U74_G75	AAA	AA08	89	0.14	AA08
118	3skr_B_G75_G76	AAw	AA10	62	0.29	AA10
119	3skr_B_G76_A77	NAN	NANT	0	0.41	AA03
120	3skr_B_A77_G78	AAw	AA10	48	0.33	AA10
121	3skr_B_G78_A79	AAA	AA00	51	0.36	AA00
122	3skr_B_A79_C80	AAA	AA00	72	0.28	AA00
123	3skr_B_C80_U81	AAA	AA00	72	0.30	AA00
124	3skr_B_U81_A82	NAN	NANT	0	0.52	AA10
125	3skr_B_A82_U83	AAA	AA00	13	0.47	AA00
126	3skr_B_U83_A84	AAA	AA00	91	0.14	AA00
127	3skr_B_A84_A85	AAA	AA08	70	0.24	AA08
128	3skr_B_A85_G86	AAA	AA03	57	0.22	AA03
129	3skr_B_G86_U87	AAA	AA00	55	0.28	AA00
130	3skr_B_U87_CCC88	NAN	NANT	0	0.39	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 130 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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