Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3sj2_A_U1_U2 | AAu | AA12 | 77 | 0.27 |
| 02 | 3sj2_A_U2_G3 | AAA | AA00 | 88 | 0.21 |
| 03 | 3sj2_A_G3_G4 | AAA | AA00 | 88 | 0.19 |
| 04 | 3sj2_A_G4_G5 | AAw | AA01 | 82 | 0.23 |
| 05 | 3sj2_A_G5_C6 | AAA | AA00 | 73 | 0.20 |
| 06 | 3sj2_A_C6_C7 | AAA | AA00 | 63 | 0.30 |
| 07 | 3sj2_A_C7_G8 | NAN | NANT | 0 | 1.07 |
| 08 | 3sj2_A_G8_G9 | SYN | AAS1 | 45 | 0.44 |
| 09 | 3sj2_A_G9_C10 | AAA | AA00 | 94 | 0.12 |
| 10 | 3sj2_A_C10_G11 | NAN | NANT | 0 | 1.05 |
| 11 | 3sj2_A_G11_G12 | SYN | AAS1 | 71 | 0.36 |
| 12 | 3sj2_A_G12_C13 | AAA | AA00 | 87 | 0.16 |
| 13 | 3sj2_A_C13_G14 | AAA | AA00 | 78 | 0.21 |
| 14 | 3sj2_A_G14_G15 | AAA | AA00 | 71 | 0.23 |
| 15 | 3sj2_A_G15_G16 | AAA | AA00 | 90 | 0.14 |
| 16 | 3sj2_A_G16_U17 | AAA | AA00 | 88 | 0.18 |
| 17 | 3sj2_A_U17_C18 | AAA | AA00 | 82 | 0.18 |
| 18 | 3sj2_A_C18_C19 | AAA | AA00 | 91 | 0.18 |
| 19 | 3sj2_B_G3_G4 | AAA | AA00 | 70 | 0.18 |
| 20 | 3sj2_B_G4_G5 | AAA | AA00 | 72 | 0.22 |
| 21 | 3sj2_B_G5_C6 | AAA | AA00 | 85 | 0.21 |
| 22 | 3sj2_B_C6_C7 | AAA | AA00 | 85 | 0.18 |
| 23 | 3sj2_B_C7_G8 | NAN | NANT | 0 | 1.03 |
| 24 | 3sj2_B_G8_G9 | SYN | AAS1 | 67 | 0.36 |
| 25 | 3sj2_B_G9_C10 | AAA | AA00 | 89 | 0.16 |
| 26 | 3sj2_B_C10_G11 | AAA | AA00 | 80 | 0.21 |
| 27 | 3sj2_B_G11_G12 | AAA | AA00 | 59 | 0.27 |
| 28 | 3sj2_B_G12_C13 | AAA | AA00 | 94 | 0.08 |
| 29 | 3sj2_B_C13_G14 | AAA | AA00 | 84 | 0.20 |
| 30 | 3sj2_B_G14_G15 | AAA | AA00 | 76 | 0.21 |
| 31 | 3sj2_B_G15_G16 | AAA | AA00 | 88 | 0.17 |
| 32 | 3sj2_B_G16_U17 | AAA | AA00 | 85 | 0.22 |
| 33 | 3sj2_B_U17_C18 | AAA | AA00 | 46 | 0.34 |
| 34 | 3sj2_B_C18_C19 | AAA | AA00 | 86 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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