Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and Dolutegravir (S/GSK1349572)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3s3m_C_DA1_DT2 | NAN | NANT | 0 | 1.97 |
| 02 | 3s3m_C_DT2_DT3 | BBw | BB16 | 45 | 0.69 |
| 03 | 3s3m_C_DT3_DG4 | NAN | NANT | 0 | 0.56 |
| 04 | 3s3m_C_DG4_DT5 | BBB | BB01 | 62 | 0.24 |
| 05 | 3s3m_C_DT5_DC6 | A-B | AB03 | 63 | 0.22 |
| 06 | 3s3m_C_DC6_DA7 | BB2 | BB07 | 60 | 0.38 |
| 07 | 3s3m_C_DA7_DT8 | B-A | BA05 | 67 | 0.17 |
| 08 | 3s3m_C_DT8_DG9 | A-B | AB03 | 51 | 0.37 |
| 09 | 3s3m_C_DG9_DG10 | BB2 | BB08 | 65 | 0.26 |
| 10 | 3s3m_C_DG10_DA11 | BBB | BB00 | 84 | 0.21 |
| 11 | 3s3m_C_DA11_DA12 | BBB | BB00 | 95 | 0.17 |
| 12 | 3s3m_C_DA12_DT13 | BBB | BB01 | 83 | 0.16 |
| 13 | 3s3m_C_DT13_DT14 | BBB | BB01 | 75 | 0.23 |
| 14 | 3s3m_C_DT14_DT15 | BBB | BB00 | 91 | 0.15 |
| 15 | 3s3m_C_DT15_DC16 | BBB | BB00 | 70 | 0.19 |
| 16 | 3s3m_C_DC16_DG17 | BBB | BB00 | 10 | 0.36 |
| 17 | 3s3m_C_DG17_DC18 | B-A | BA05 | 31 | 0.20 |
| 18 | 3s3m_C_DC18_DA19 | A-B | AB01 | 53 | 0.42 |
| 19 | 3s3m_D_DT1_DG2 | NAN | NANT | 0 | 0.70 |
| 20 | 3s3m_D_DG2_DC3 | B-A | BA08 | 74 | 0.29 |
| 21 | 3s3m_D_DC3_DG4 | BBB | BB01 | 15 | 0.44 |
| 22 | 3s3m_D_DG4_DA5 | BBB | BB00 | 63 | 0.19 |
| 23 | 3s3m_D_DA5_DA6 | miB | BB10 | 70 | 0.34 |
| 24 | 3s3m_D_DA6_DA7 | BBB | BB01 | 82 | 0.16 |
| 25 | 3s3m_D_DA7_DT8 | BBB | BB01 | 82 | 0.20 |
| 26 | 3s3m_D_DT8_DT9 | BBB | BB01 | 38 | 0.20 |
| 27 | 3s3m_D_DT9_DC10 | BBB | BB00 | 91 | 0.17 |
| 28 | 3s3m_D_DC10_DC11 | BBB | BB00 | 74 | 0.34 |
| 29 | 3s3m_D_DC11_DA12 | BB2 | BB07 | 83 | 0.27 |
| 30 | 3s3m_D_DA12_DT13 | BBB | BB00 | 46 | 0.28 |
| 31 | 3s3m_D_DT13_DG14 | BBB | BB00 | 72 | 0.25 |
| 32 | 3s3m_D_DG14_DA15 | BBB | BB00 | 59 | 0.43 |
| 33 | 3s3m_D_DA15_DC16 | B-A | BA08 | 70 | 0.27 |
| 34 | 3s3m_D_DC16_DA17 | NAN | NANT | 0 | 2.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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