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Conformers: ABBIImiBZICOPNSYNN
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2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b)

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013rej_I_DA-72_DT-71BBBBB0090.39 BB00
0023rej_I_DT-71_DC-70NANNANT00.41 BB17
0033rej_I_DC-70_DT-69NANNANT00.52 BB17
0043rej_I_DT-69_DC-68BBBBB00180.39 BB00
0053rej_I_DC-68_DC-67B12BB05190.32 BB05
0063rej_I_DC-67_DA-66BBBBB00320.44 BB00
0073rej_I_DA-66_DA-65B12BB04750.23 BB04
0083rej_I_DA-65_DA-64BBBBB00690.15 BB00
0093rej_I_DA-64_DT-63BBBBB00780.17 BB00
0103rej_I_DT-63_DA-62NANNANT00.36 BB17
0113rej_I_DA-62_DT-61BBBBB00620.24 BB00
0123rej_I_DT-61_DC-60BBBBB00800.16 BB00
0133rej_I_DC-60_DC-59B12BB04650.16 BB04
0143rej_I_DC-59_DC-58BBBBB00330.39 BB00
0153rej_I_DC-58_DT-57BBBBB00490.26 BB00
0163rej_I_DT-57_DT-56BBBBB00180.20 BB00
0173rej_I_DT-56_DG-55BB2BB07630.24 BB07
0183rej_I_DG-55_DC-54B12BB04570.33 BB04
0193rej_I_DC-54_DG-53BBBBB00670.53 BB00
0203rej_I_DG-53_DG-52BB2BB07540.25 BB07
0213rej_I_DG-52_DA-51miBBB10710.27 BB10
0223rej_I_DA-51_DT-50NANNANT00.51 BB17
0233rej_I_DT-50_DC-49BBBBB00840.14 BB00
0243rej_I_DC-49_DG-48miBBB10830.32 BB10
0253rej_I_DG-48_DT-47B12BB04610.22 BB04
0263rej_I_DT-47_DA-46BB2BB07450.37 BB07
0273rej_I_DA-46_DG-45miBBB10680.29 BB10
0283rej_I_DG-45_DA-44B12BB04640.17 BB04
0293rej_I_DA-44_DA-43BBBBB00890.17 BB00
0303rej_I_DA-43_DA-42BBBBB00770.17 BB00
0313rej_I_DA-42_DA-41BBBBB00740.20 BB00
0323rej_I_DA-41_DA-40BBBBB00650.22 BB00
0333rej_I_DA-40_DG-39B12BB04700.24 BB04
0343rej_I_DG-39_DT-38BBBBB00250.44 BB00
0353rej_I_DT-38_DG-37BBBBB00100.35 BB00
0363rej_I_DG-37_DT-36BB2BB07350.28 BB07
0373rej_I_DT-36_DG-35BB2BB07660.30 BB07
0383rej_I_DG-35_DT-34BBBBB00360.32 BB00
0393rej_I_DT-34_DC-33B12BB04250.35 BB04
0403rej_I_DC-33_DA-32B12BB04470.24 BB04
0413rej_I_DA-32_DA-31miBBB10520.23 BB10
0423rej_I_DA-31_DA-30B12BB04730.14 BB04
0433rej_I_DA-30_DC-29BBwBB17510.29 BB17
0443rej_I_DC-29_DT-28miBBB14730.23 BB14
0453rej_I_DT-28_DG-27BB2BB07490.21 BB07
0463rej_I_DG-27_DC-26BB2BB07770.31 BB07
0473rej_I_DC-26_DG-25BBBBB00340.39 BB00
0483rej_I_DG-25_DC-24NANNANT00.29 BA17
0493rej_I_DC-24_DT-23BBBBB00310.28 BB00
0503rej_I_DT-23_DA-22BBBBB00320.26 BB00
0513rej_I_DA-22_DT-21BBBBB00420.31 BB00
0523rej_I_DT-21_DC-20miBBB10910.20 BB10
0533rej_I_DC-20_DA-19miBBB10900.18 BB10
0543rej_I_DA-19_DA-18miBBB10590.39 BB10
0553rej_I_DA-18_DA-17NANNANT00.32 BB00
0563rej_I_DA-17_DG-16BBBBB00630.21 BB00
0573rej_I_DG-16_DG-15BB2BB07460.33 BB07
0583rej_I_DG-15_DG-14miBBB10560.41 BB10
0593rej_I_DG-14_DA-13B12BB04740.17 BB04
0603rej_I_DA-13_DA-12BBBBB00920.10 BB00
0613rej_I_DA-12_DA-11BBBBB00810.21 BB00
0623rej_I_DA-11_DC-10NANNANT00.35 BA08
0633rej_I_DC-10_DT-9A-BAB01600.24 AB01
0643rej_I_DT-9_DT-8BBBBB00780.14 BB00
0653rej_I_DT-8_DC-7BBBBB00810.20 BB00
0663rej_I_DC-7_DA-6BB2BB07680.34 BB07
0673rej_I_DA-6_DA-5BBBBB00540.23 BB00
0683rej_I_DA-5_DC-4BB2BB07180.24 BB07
0693rej_I_DC-4_DT-3BBBBB00430.28 BB00
0703rej_I_DT-3_DG-2BBBBB00720.28 BB00
0713rej_I_DG-2_DA-1NANNANT00.25 BA17
0723rej_I_DA-1_DA0BBBBB00910.12 BB00
0733rej_I_DA0_DT1BBBBB00530.19 BB00
0743rej_I_DT1_DT2BBBBB00410.29 BB00
0753rej_I_DT2_DC3BBBBB00680.30 BB00
0763rej_I_DC3_DA4BB2BB07800.24 BB07
0773rej_I_DA4_DG5BBBBB00220.21 BB00
0783rej_I_DG5_DT6BB2BB07180.27 BB07
0793rej_I_DT6_DT7NANNANT00.46 BB08
0803rej_I_DT7_DG8BBBBB00810.35 BB00
0813rej_I_DG8_DA9BBBBB00880.21 BB00
0823rej_I_DA9_DA10BBBBB01370.28 BB01
0833rej_I_DA10_DG11BBBBB00380.30 BB00
0843rej_I_DG11_DT12BBBBB00720.24 BB00
0853rej_I_DT12_DT13BBBBB01790.21 BB01
0863rej_I_DT13_DT14BBBBB00510.24 BB00
0873rej_I_DT14_DC15BBBBB00490.29 BB00
0883rej_I_DC15_DC16miBBB10570.30 BB10
0893rej_I_DC16_DC17BB2BB07540.32 BB07
0903rej_I_DC17_DT18BBBBB01870.20 BB01
0913rej_I_DT18_DT19BBBBB00670.15 BB00
0923rej_I_DT19_DT20BBBBB00730.26 BB00
0933rej_I_DT20_DG21BBBBB00690.25 BB00
0943rej_I_DG21_DA22miBBB13770.26 BB13
0953rej_I_DA22_DT23NANNANT00.43 BB10
0963rej_I_DT23_DA24NANNANT00.33 BB17
0973rej_I_DA24_DG25BBBBB00510.22 BB00
0983rej_I_DG25_DC26BB2BB07360.36 BB07
0993rej_I_DC26_DG27BBBBB00710.40 BB00
1003rej_I_DG27_DC28BB2BB07460.26 BB07
1013rej_I_DC28_DA29BBBBB00670.21 BB00
1023rej_I_DA29_DG30miBBB10300.52 BB10
1033rej_I_DG30_DT31BBBBB00790.25 BB00
1043rej_I_DT31_DT32BBBBB00410.23 BB00
1053rej_I_DT32_DT33BBBBB00870.15 BB00
1063rej_I_DT33_DG34BB2BB07530.33 BB07
1073rej_I_DG34_DA35NANNANT00.36 BB07
1083rej_I_DA35_DC36BBBBB00530.25 BB00
1093rej_I_DC36_DA37NANNANT00.44 BB10
1103rej_I_DA37_DC38B12BB04750.23 BB04
1113rej_I_DC38_DA39B12BB04400.22 BB04
1123rej_I_DA39_DC40BBBBB01670.23 BB01
1133rej_I_DC40_DT41BBwBB17600.23 BB17
1143rej_I_DT41_DT42B12BB04360.25 BB04
1153rej_I_DT42_DT43BBBBB00710.25 BB00
1163rej_I_DT43_DT44BBBBB00600.27 BB00
1173rej_I_DT44_DT45BBBBB00530.32 BB00
1183rej_I_DT45_DC46BBBBB00790.20 BB00
1193rej_I_DC46_DT47BB2BB07590.31 BB07
1203rej_I_DT47_DA48BBBBB00610.27 BB00
1213rej_I_DA48_DC49B12BB04720.18 BB04
1223rej_I_DC49_DG50B12BB04360.21 BB04
1233rej_I_DG50_DA51BBBBB00890.19 BB00
1243rej_I_DA51_DT52BBBBB01780.19 BB01
1253rej_I_DT52_DC53BBwBB17540.44 BB17
1263rej_I_DC53_DC54miBBB14780.23 BB14
1273rej_I_DC54_DG55B12BB04740.28 BB04
1283rej_I_DG55_DC56BBBBB00610.27 BB00
1293rej_I_DC56_DA57BB2BB07300.37 BB07
1303rej_I_DA57_DA58BBBBB00280.41 BB00
1313rej_I_DA58_DG59NANNANT00.40 BB05
1323rej_I_DG59_DG60miBBB10350.39 BB10
1333rej_I_DG60_DG61miBBB10410.54 BB10
1343rej_I_DG61_DA62BBBBB00440.28 BB00
1353rej_I_DA62_DT63BBBBB00570.34 BB00
1363rej_I_DT63_DA64BBBBB00380.36 BB00
1373rej_I_DA64_DT65BBBBB00720.33 BB00
1383rej_I_DT65_DT66miBBB10730.39 BB10
1393rej_I_DT66_DT67BBBBB00320.30 BB00
1403rej_I_DT67_DG68NANNANT00.51 BB10
1413rej_I_DG68_DG69NANNANT00.36 BB00
1423rej_I_DG69_DA70BB2BB07520.22 BB07
1433rej_I_DA70_DG71BBBBB00890.18 BB00
1443rej_I_DG71_DA72BBBBB00810.25 BB00
1453rej_I_DA72_DT73BBBBB00880.25 BB00
1463rej_J_DA-73_DT-72NANNANT00.45 BB17
1473rej_J_DT-72_DC-71BBBBB00540.38 BB00
1483rej_J_DC-71_DT-70BBBBB00230.23 BB00
1493rej_J_DT-70_DC-69BBBBB00730.20 BB00
1503rej_J_DC-69_DC-68NANNANT00.26 BB07
1513rej_J_DC-68_DA-67B12BB04470.33 BB04
1523rej_J_DA-67_DA-66B12BB04750.19 BB04
1533rej_J_DA-66_DA-65BBBBB00710.16 BB00
1543rej_J_DA-65_DT-64BBBBB00790.19 BB00
1553rej_J_DT-64_DA-63BBBBB00720.28 BB00
1563rej_J_DA-63_DT-62BBBBB00260.36 BB00
1573rej_J_DT-62_DC-61BBBBB01800.17 BB01
1583rej_J_DC-61_DC-60BBBBB01810.21 BB01
1593rej_J_DC-60_DC-59BBwBB17680.19 BB17
1603rej_J_DC-59_DT-58BB2BB07370.27 BB07
1613rej_J_DT-58_DT-57miBBB10330.27 BB10
1623rej_J_DT-57_DG-56BB2BB07280.38 BB07
1633rej_J_DG-56_DC-55B-ABA08500.28 BA08
1643rej_J_DC-55_DG-54BBBBB00290.51 BB00
1653rej_J_DG-54_DG-53miBBB10430.30 BB10
1663rej_J_DG-53_DA-52NANNANT00.36 BB02
1673rej_J_DA-52_DT-51NANNANT00.44 BB16
1683rej_J_DT-51_DC-50BBBBB00270.41 BB00
1693rej_J_DC-50_DG-49miBBB10880.22 BB10
1703rej_J_DG-49_DT-48BBwBB17790.30 BB17
1713rej_J_DT-48_DA-47BB2BB07260.46 BB07
1723rej_J_DA-47_DG-46BBBBB00460.34 BB00
1733rej_J_DG-46_DA-45miBBB10480.34 BB10
1743rej_J_DA-45_DA-44B12BB04620.18 BB04
1753rej_J_DA-44_DA-43BBBBB00900.14 BB00
1763rej_J_DA-43_DA-42BBBBB00860.14 BB00
1773rej_J_DA-42_DA-41BBBBB00830.16 BB00
1783rej_J_DA-41_DG-40B12BB04850.24 BB04
1793rej_J_DG-40_DT-39BBBBB00880.16 BB00
1803rej_J_DT-39_DG-38miBBB10700.37 BB10
1813rej_J_DG-38_DT-37BBwBB17620.23 BB17
1823rej_J_DT-37_DG-36BB2BB07760.16 BB07
1833rej_J_DG-36_DT-35BB2BB07460.22 BB07
1843rej_J_DT-35_DC-34NANNANT00.47 BB15
1853rej_J_DC-34_DA-33BB2BB07340.37 BB07
1863rej_J_DA-33_DA-32BBBBB00350.29 BB00
1873rej_J_DA-32_DA-31miBBB10910.11 BB10
1883rej_J_DA-31_DC-30miBBB10860.33 BB10
1893rej_J_DC-30_DT-29BBBBB00340.41 BB00
1903rej_J_DT-29_DG-28BBBBB00510.31 BB00
1913rej_J_DG-28_DC-27BBBBB00690.23 BB00
1923rej_J_DC-27_DG-26BB2BB07780.31 BB07
1933rej_J_DG-26_DC-25BBBBB00770.22 BB00
1943rej_J_DC-25_DT-24BB2BB07590.32 BB07
1953rej_J_DT-24_DA-23BBBBB00770.20 BB00
1963rej_J_DA-23_DT-22BBBBB00520.30 BB00
1973rej_J_DT-22_DC-21NANNANT00.35 BA08
1983rej_J_DC-21_DA-20NANNANT00.41 BB17
1993rej_J_DA-20_DA-19miBBB10510.40 BB10
2003rej_J_DA-19_DA-18miBBB10550.38 BB10
2013rej_J_DA-18_DG-17NANNANT00.64 BB00
2023rej_J_DG-17_DG-16NANNANT00.50 BB17
2033rej_J_DG-16_DG-15miBBB10570.51 BB10
2043rej_J_DG-15_DA-14B12BB04220.19 BB04
2053rej_J_DA-14_DA-13BBBBB01680.23 BB01
2063rej_J_DA-13_DA-12BBBBB00800.17 BB00
2073rej_J_DA-12_DC-11B12BB0480.48 BB04
2083rej_J_DC-11_DT-10BBBBB01380.22 BB01
2093rej_J_DT-10_DT-9BBBBB00600.34 BB00
2103rej_J_DT-9_DC-8BBBBB01800.15 BB01
2113rej_J_DC-8_DA-7BBBBB00270.32 BB00
2123rej_J_DA-7_DA-6BB2BB07340.39 BB07
2133rej_J_DA-6_DC-5BBBBB00470.31 BB00
2143rej_J_DC-5_DT-4BB2BB07550.23 BB07
2153rej_J_DT-4_DG-3BBBBB00360.42 BB00
2163rej_J_DG-3_DA-2BBBBB00900.17 BB00
2173rej_J_DA-2_DA-1BBBBB00540.22 BB00
2183rej_J_DA-1_DT0BBBBB01660.14 BB01
2193rej_J_DT0_DT1BBBBB01790.15 BB01
2203rej_J_DT1_DC2BBBBB00600.19 BB00
2213rej_J_DC2_DA3B12BB04410.35 BB04
2223rej_J_DA3_DG4NANNANT00.20 BB07
2233rej_J_DG4_DT5BBBBB00480.42 BB00
2243rej_J_DT5_DT6BBBBB00410.24 BB00
2253rej_J_DT6_DG7BB2BB07710.23 BB07
2263rej_J_DG7_DA8B12BB04180.24 BB04
2273rej_J_DA8_DA9BBBBB01830.22 BB01
2283rej_J_DA9_DG10BBBBB01870.17 BB01
2293rej_J_DG10_DT11BBBBB00580.26 BB00
2303rej_J_DT11_DT12BBBBB00740.20 BB00
2313rej_J_DT12_DT13BBBBB00870.22 BB00
2323rej_J_DT13_DC14BBBBB00940.23 BB00
2333rej_J_DC14_DC15BB2BB07340.41 BB07
2343rej_J_DC15_DC16BBBBB00500.35 BB00
2353rej_J_DC16_DT17BB2BB07770.30 BB07
2363rej_J_DT17_DT18BBBBB01760.23 BB01
2373rej_J_DT18_DT19BBBBB00690.18 BB00
2383rej_J_DT19_DG20BBBBB00580.18 BB00
2393rej_J_DG20_DA21BBBBB00430.38 BB00
2403rej_J_DA21_DT22NANNANT00.38 BB14
2413rej_J_DT22_DA23miBBB10330.31 BB10
2423rej_J_DA23_DG24BBwBB17300.36 BB17
2433rej_J_DG24_DC25miBBB10520.36 BB10
2443rej_J_DC25_DG26NANNANT00.34 BB07
2453rej_J_DG26_DC27BBBBB00590.20 BB00
2463rej_J_DC27_DA28BB2BB07840.22 BB07
2473rej_J_DA28_DG29BBBBB00760.25 BB00
2483rej_J_DG29_DT30B12BB04550.30 BB04
2493rej_J_DT30_DT31BBBBB01760.21 BB01
2503rej_J_DT31_DT32BBBBB00590.34 BB00
2513rej_J_DT32_DG33B12BB04800.24 BB04
2523rej_J_DG33_DA34miBBB10900.25 BB10
2533rej_J_DA34_DC35BBBBB00300.23 BB00
2543rej_J_DC35_DA36BB2BB07600.40 BB07
2553rej_J_DA36_DC37BBBBB00630.23 BB00
2563rej_J_DC37_DA38B12BB04860.20 BB04
2573rej_J_DA38_DC39BBBBB00910.10 BB00
2583rej_J_DC39_DT40miBBB10800.23 BB10
2593rej_J_DT40_DT41BBBBB00420.31 BB00
2603rej_J_DT41_DT42BBBBB00890.17 BB00
2613rej_J_DT42_DT43BBBBB00560.33 BB00
2623rej_J_DT43_DT44NANNANT00.39 BB17
2633rej_J_DT44_DC45BBBBB00600.35 BB00
2643rej_J_DC45_DT46BBBBB00140.29 BB00
2653rej_J_DT46_DA47BB2BB07400.40 BB07
2663rej_J_DA47_DC48BBBBB00560.25 BB00
2673rej_J_DC48_DG49B12BB04690.23 BB04
2683rej_J_DG49_DA50BBBBB00680.27 BB00
2693rej_J_DA50_DT51NANNANT00.36 AB03
2703rej_J_DT51_DC52BBBBB00750.28 BB00
2713rej_J_DC52_DC53BBBBB00690.28 BB00
2723rej_J_DC53_DG54BB2BB07660.38 BB07
2733rej_J_DG54_DC55BBBBB00340.34 BB00
2743rej_J_DC55_DA56BB2BB07710.30 BB07
2753rej_J_DA56_DA57BB2BB07800.20 BB07
2763rej_J_DA57_DG58BBBBB00350.27 BB00
2773rej_J_DG58_DG59BBBBB00760.27 BB00
2783rej_J_DG59_DG60BBBBB00880.15 BB00
2793rej_J_DG60_DA61B12BB04370.21 BB04
2803rej_J_DA61_DT62BBBBB00600.32 BB00
2813rej_J_DT62_DA63BBBBB00260.38 BB00
2823rej_J_DA63_DT64BBBBB00740.26 BB00
2833rej_J_DT64_DT65BBBBB00380.38 BB00
2843rej_J_DT65_DT66BBBBB00930.15 BB00
2853rej_J_DT66_DG67B12BB04190.28 BB04
2863rej_J_DG67_DG68BBwBB02340.25 BB02
2873rej_J_DG68_DA69BBBBB00100.37 BB00
2883rej_J_DA69_DG70BBBBB00810.22 BB00
2893rej_J_DG70_DA71BBBBB00710.29 BB00
2903rej_J_DA71_DT72miBBB10350.39 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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