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Conformers: ABBIImiBZICOPNSYNN
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2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013rei_I_DA-72_DT-71BBwBB17550.31 BB17
0023rei_I_DT-71_DC-70miBBB14840.29 BB14
0033rei_I_DC-70_DA-69miBBB10790.30 BB10
0043rei_I_DA-69_DA-68B12BB04800.18 BB04
0053rei_I_DA-68_DT-67miBBB15180.42 BB15
0063rei_I_DT-67_DA-66BB2BB07520.38 BB07
0073rei_I_DA-66_DT-65BBBBB00760.25 BB00
0083rei_I_DT-65_DC-64BBBBB00570.20 BB00
0093rei_I_DC-64_DC-63NANNANT00.47 BB02
0103rei_I_DC-63_DA-62miBBB10470.34 BB10
0113rei_I_DA-62_DC-61B-ABA05460.40 BA05
0123rei_I_DC-61_DC-60BBwBB17780.22 BB17
0133rei_I_DC-60_DT-59B12BB04570.41 BB04
0143rei_I_DT-59_DG-58BBBBB00400.38 BB00
0153rei_I_DG-58_DC-57BBBBB00400.25 BB00
0163rei_I_DC-57_DA-56NANNANT00.65 BA17
0173rei_I_DA-56_DG-55B-ABA08320.63 BA08
0183rei_I_DG-55_DA-54NANNANT00.38 BA08
0193rei_I_DA-54_DT-53miBBB10530.29 BB10
0203rei_I_DT-53_DA-52BBBBB01310.29 BB01
0213rei_I_DA-52_DC-51BBwBB02230.41 BB02
0223rei_I_DC-51_DT-50NANNANT00.33 BB14
0233rei_I_DT-50_DA-49BBBBB00460.29 BB00
0243rei_I_DA-49_DC-48BBBBB00660.26 BB00
0253rei_I_DC-48_DC-47miBBB10580.26 BB10
0263rei_I_DC-47_DA-46BB2BB07190.48 BB07
0273rei_I_DA-46_DA-45B12BB04120.44 BB04
0283rei_I_DA-45_DA-44B12BB05650.28 BB05
0293rei_I_DA-44_DA-43BBwBB16240.35 BB16
0303rei_I_DA-43_DG-42B-ABA05590.43 BA05
0313rei_I_DG-42_DT-41BBBBB01380.24 BB01
0323rei_I_DT-41_DG-40BBBBB01340.29 BB01
0333rei_I_DG-40_DT-39BBBBB00210.40 BB00
0343rei_I_DT-39_DA-38B12BB04430.32 BB04
0353rei_I_DA-38_DT-37BBBBB00370.47 BB00
0363rei_I_DT-37_DT-36BBBBB00510.39 BB00
0373rei_I_DT-36_DT-35BBBBB00780.20 BB00
0383rei_I_DT-35_DG-34BB2BB07380.37 BB07
0393rei_I_DG-34_DG-33BBBBB00430.36 BB00
0403rei_I_DG-33_DA-32BB2BB07120.37 BB07
0413rei_I_DA-32_DA-31miBBB14670.28 BB14
0423rei_I_DA-31_DA-30miBBB10310.29 BB10
0433rei_I_DA-30_DC-29B12BB04770.25 BB04
0443rei_I_DC-29_DT-28BBwBB17480.32 BB17
0453rei_I_DT-28_DG-27NANNANT00.34 BB07
0463rei_I_DG-27_DC-26B12BB04250.38 BB04
0473rei_I_DC-26_DT-25NANNANT00.48 BB08
0483rei_I_DT-25_DC-24BBBBB00530.61 BB00
0493rei_I_DC-24_DC-23BB2BB07340.27 BB07
0503rei_I_DC-23_DA-22BBBBB00400.46 BB00
0513rei_I_DA-22_DT-21BBBBB00720.25 BB00
0523rei_I_DT-21_DC-20BBBBB00210.20 BB00
0533rei_I_DC-20_DA-19miBBB10410.50 BB10
0543rei_I_DA-19_DA-18BBBBB00510.32 BB00
0553rei_I_DA-18_DA-17BBBBB00500.26 BB00
0563rei_I_DA-17_DA-16BBBBB00640.26 BB00
0573rei_I_DA-16_DG-15miBBB10550.28 BB10
0583rei_I_DG-15_DG-14BB2BB07570.44 BB07
0593rei_I_DG-14_DC-13BBBBB00530.30 BB00
0603rei_I_DC-13_DA-12B12BB04600.35 BB04
0613rei_I_DA-12_DT-11B-ABA05320.28 BA05
0623rei_I_DT-11_DG-10NANNANT00.77 BB02
0633rei_I_DG-10_DT-9BBBBB00540.37 BB00
0643rei_I_DT-9_DT-8BBBBB00670.17 BB00
0653rei_I_DT-8_DC-7BBBBB00540.30 BB00
0663rei_I_DC-7_DA-6BB2BB07320.40 BB07
0673rei_I_DA-6_DG-5BBBBB00670.28 BB00
0683rei_I_DG-5_DC-4BB2BB07310.29 BB07
0693rei_I_DC-4_DT-3BBBBB00750.22 BB00
0703rei_I_DT-3_DG-2BBBBB00720.27 BB00
0713rei_I_DG-2_DA-1B12BB04120.18 BB04
0723rei_I_DA-1_DA0BBBBB00750.14 BB00
0733rei_I_DA0_DT1BBBBB00880.15 BB00
0743rei_I_DT1_DC2BBBBB00820.21 BB00
0753rei_I_DC2_DA3BB2BB07470.31 BB07
0763rei_I_DA3_DG4BBBBB00560.24 BB00
0773rei_I_DG4_DC5B12BB04500.31 BB04
0783rei_I_DC5_DT6NANNANT00.52 BB10
0793rei_I_DT6_DG7BB2BB07350.41 BB07
0803rei_I_DG7_DA8B12BB04550.27 BB04
0813rei_I_DA8_DA9BBBBB00810.19 BB00
0823rei_I_DA9_DC10BBBBB00450.24 BB00
0833rei_I_DC10_DA11miBBB10450.40 BB10
0843rei_I_DA11_DT12BBBBB00610.17 BB00
0853rei_I_DT12_DG13miBBB10720.28 BB10
0863rei_I_DG13_DC14BBBBB00170.24 BB00
0873rei_I_DC14_DC15BB2BB07220.50 BB07
0883rei_I_DC15_DT16BBBBB00480.19 BB00
0893rei_I_DT16_DT17BBBBB00250.37 BB00
0903rei_I_DT17_DT18BBBBB00850.16 BB00
0913rei_I_DT18_DT19BBBBB00810.14 BB00
0923rei_I_DT19_DG20BBBBB00830.27 BB00
0933rei_I_DG20_DA21miBBB10710.45 BB10
0943rei_I_DA21_DT22BBBBB00220.42 BB00
0953rei_I_DT22_DG23BBwBB11340.47 BB11
0963rei_I_DG23_DG24BBwBB17630.32 BB17
0973rei_I_DG24_DA25BB2BB07710.38 BB07
0983rei_I_DA25_DG26BBBBB00840.20 BB00
0993rei_I_DG26_DC27BB2BB07240.23 BB07
1003rei_I_DC27_DA28BBBBB00410.41 BB00
1013rei_I_DA28_DG29BB2BB07540.35 BB07
1023rei_I_DG29_DT30B-ABA05110.32 BA05
1033rei_I_DT30_DT31BBBBB01100.31 BB01
1043rei_I_DT31_DT32miBBB10470.31 BB10
1053rei_I_DT32_DC33NANNANT00.34 BB17
1063rei_I_DC33_DC34BB2BB07260.27 BB07
1073rei_I_DC34_DA35BB2BB07560.25 BB07
1083rei_I_DA35_DA36BBBBB00660.18 BB00
1093rei_I_DA36_DA37NANNANT00.18 BB04
1103rei_I_DA37_DT38B12BB04690.24 BB04
1113rei_I_DT38_DA39BBBBB00780.29 BB00
1123rei_I_DA39_DC40NANNANT00.58 BB12
1133rei_I_DC40_DA41A-BAB01180.58 AB01
1143rei_I_DA41_DC42miBBB10600.20 BB10
1153rei_I_DC42_DT43miBBB14580.32 BB14
1163rei_I_DT43_DT44BBBBB00250.41 BB00
1173rei_I_DT44_DT45B-ABA01360.26 BA01
1183rei_I_DT45_DT46NANNANT00.38 AB02
1193rei_I_DT46_DG47B12BB04200.38 BB04
1203rei_I_DG47_DG48BBBBB00550.32 BB00
1213rei_I_DG48_DT49BBBBB00240.23 BB00
1223rei_I_DT49_DA50miBBB10330.28 BB10
1233rei_I_DA50_DG51B12BB04150.22 BB04
1243rei_I_DG51_DT52B-ABA05310.22 BA05
1253rei_I_DT52_DA53A-BAB01160.38 AB01
1263rei_I_DA53_DT54BBwBB17640.31 BB17
1273rei_I_DT54_DC55BBBBB00530.40 BB00
1283rei_I_DC55_DT56BBBBB00360.38 BB00
1293rei_I_DT56_DG57BB2BB07350.34 BB07
1303rei_I_DG57_DC58BBBBB00400.25 BB00
1313rei_I_DC58_DA59BB2BB07560.31 BB07
1323rei_I_DA59_DG60NANNANT00.53 BB11
1333rei_I_DG60_DG61B-ABA08410.32 BA08
1343rei_I_DG61_DT62BBBBB01380.25 BB01
1353rei_I_DT62_DG63miBBB14660.34 BB14
1363rei_I_DG63_DG64miBBB14640.30 BB14
1373rei_I_DG64_DA65BBBBB00400.56 BB00
1383rei_I_DA65_DT66BBwBB17710.27 BB17
1393rei_I_DT66_DA67miBBB10220.53 BB10
1403rei_I_DA67_DT68BBBBB00860.16 BB00
1413rei_I_DT68_DT69BBBBB00900.15 BB00
1423rei_I_DT69_DG70BBBBB00870.18 BB00
1433rei_I_DG70_DA71B12BB04470.13 BB04
1443rei_I_DA71_DT72BBBBB01450.25 BB01
1453rei_J_DA-72_DT-71NANNANT00.54 AB04
1463rei_J_DT-71_DC-70NANNANT00.44 AB02
1473rei_J_DC-70_DA-69BB2BB07380.32 BB07
1483rei_J_DA-69_DA-68B-ABA17780.23 BA17
1493rei_J_DA-68_DT-67BBBBB00450.29 BB00
1503rei_J_DT-67_DA-66BB2BB07650.30 BB07
1513rei_J_DA-66_DT-65BBBBB00860.14 BB00
1523rei_J_DT-65_DC-64B12BB04720.25 BB04
1533rei_J_DC-64_DC-63BBBBB00860.16 BB00
1543rei_J_DC-63_DA-62B12BB04240.25 BB04
1553rei_J_DA-62_DC-61BBBBB00680.25 BB00
1563rei_J_DC-61_DC-60BBBBB00860.25 BB00
1573rei_J_DC-60_DT-59BBBBB00780.23 BB00
1583rei_J_DT-59_DG-58BB2BB07390.37 BB07
1593rei_J_DG-58_DC-57miBBB14790.27 BB14
1603rei_J_DC-57_DA-56BB2BB07190.36 BB07
1613rei_J_DA-56_DG-55BBBBB00310.36 BB00
1623rei_J_DG-55_DA-54B-ABA08660.33 BA08
1633rei_J_DA-54_DT-53BBBBB01130.27 BB01
1643rei_J_DT-53_DA-52NANNANT00.35 BA08
1653rei_J_DA-52_DC-51BBwBB17830.16 BB17
1663rei_J_DC-51_DT-50NANNANT00.41 BB10
1673rei_J_DT-50_DA-49NANNANT00.34 BB17
1683rei_J_DA-49_DC-48NANNANT00.31 BB17
1693rei_J_DC-48_DC-47B-ABA17280.40 BA17
1703rei_J_DC-47_DA-46NANNANT00.65 BB10
1713rei_J_DA-46_DA-45miBBB10290.45 BB10
1723rei_J_DA-45_DA-44NANNANT00.41 BB08
1733rei_J_DA-44_DA-43NANNANT00.52 BB17
1743rei_J_DA-43_DG-42B12BB04490.26 BB04
1753rei_J_DG-42_DT-41B12BB04200.37 BB04
1763rei_J_DT-41_DG-40NANNANT00.39 BB17
1773rei_J_DG-40_DT-39miBBB14320.31 BB14
1783rei_J_DT-39_DA-38miBBB14370.25 BB14
1793rei_J_DA-38_DT-37BBBBB00650.41 BB00
1803rei_J_DT-37_DT-36BBBBB00420.32 BB00
1813rei_J_DT-36_DT-35BBBBB00590.21 BB00
1823rei_J_DT-35_DG-34NANNANT00.36 BB07
1833rei_J_DG-34_DG-33BBBBB00460.29 BB00
1843rei_J_DG-33_DA-32BB2BB07560.47 BB07
1853rei_J_DA-32_DA-31NANNANT00.36 BB14
1863rei_J_DA-31_DA-30NANNANT00.31 BB14
1873rei_J_DA-30_DC-29BBBBB01310.30 BB01
1883rei_J_DC-29_DT-28BBBBB00500.27 BB00
1893rei_J_DT-28_DG-27BB2BB07300.36 BB07
1903rei_J_DG-27_DC-26BBBBB01660.40 BB01
1913rei_J_DC-26_DT-25BB2BB07470.38 BB07
1923rei_J_DT-25_DC-24NANNANT00.46 BB15
1933rei_J_DC-24_DC-23BB2BB07170.26 BB07
1943rei_J_DC-23_DA-22BBBBB00640.39 BB00
1953rei_J_DA-22_DT-21BBBBB01610.29 BB01
1963rei_J_DT-21_DC-20B-ABA05150.24 BA05
1973rei_J_DC-20_DA-19NANNANT00.45 BB14
1983rei_J_DA-19_DA-18NANNANT00.79 BB16
1993rei_J_DA-18_DA-17miBBB10680.30 BB10
2003rei_J_DA-17_DA-16BB2BB07480.37 BB07
2013rei_J_DA-16_DG-15BB2BB07510.31 BB07
2023rei_J_DG-15_DG-14BB2BB07370.45 BB07
2033rei_J_DG-14_DC-13BBBBB00790.27 BB00
2043rei_J_DC-13_DA-12BBBBB00860.24 BB00
2053rei_J_DA-12_DT-11BBBBB00580.21 BB00
2063rei_J_DT-11_DG-10BBBBB00430.33 BB00
2073rei_J_DG-10_DT-9BBBBB00490.30 BB00
2083rei_J_DT-9_DT-8BBBBB01740.16 BB01
2093rei_J_DT-8_DC-7BBBBB00200.32 BB00
2103rei_J_DC-7_DA-6BB2BB07690.33 BB07
2113rei_J_DA-6_DG-5BBBBB00590.29 BB00
2123rei_J_DG-5_DC-4BB2BB07640.18 BB07
2133rei_J_DC-4_DT-3BBBBB00690.28 BB00
2143rei_J_DT-3_DG-2BBBBB00650.26 BB00
2153rei_J_DG-2_DA-1BBBBB00550.39 BB00
2163rei_J_DA-1_DT0BBBBB00690.24 BB00
2173rei_J_DT0_DT1BBBBB00830.21 BB00
2183rei_J_DT1_DC2B12BB04660.35 BB04
2193rei_J_DC2_DA3miBBB10510.46 BB10
2203rei_J_DA3_DG4NANNANT00.31 BB10
2213rei_J_DG4_DC5B-ABA17580.29 BA17
2223rei_J_DC5_DT6A-BAB02560.33 AB02
2233rei_J_DT6_DG7NANNANT00.66 BB08
2243rei_J_DG7_DA8B12BB04510.35 BB04
2253rei_J_DA8_DA9BBBBB00500.21 BB00
2263rei_J_DA9_DC10NANNANT00.52 BA08
2273rei_J_DC10_DA11NANNANT00.60 BB17
2283rei_J_DA11_DT12BBBBB00530.39 BB00
2293rei_J_DT12_DG13BB2BB07630.41 BB07
2303rei_J_DG13_DC14BB2BB07540.32 BB07
2313rei_J_DC14_DC15NANNANT00.40 BB10
2323rei_J_DC15_DT16B12BB04120.32 BB04
2333rei_J_DT16_DT17BBBBB00790.24 BB00
2343rei_J_DT17_DT18BBBBB00850.13 BB00
2353rei_J_DT18_DT19BBBBB00920.15 BB00
2363rei_J_DT19_DG20B12BB04580.47 BB04
2373rei_J_DG20_DA21miBBB10310.45 BB10
2383rei_J_DA21_DT22BBBBB00550.37 BB00
2393rei_J_DT22_DG23BBwBB11480.45 BB11
2403rei_J_DG23_DG24NANNANT00.65 BB11
2413rei_J_DG24_DA25NANNANT00.57 BA17
2423rei_J_DA25_DG26BBBBB00190.30 BB00
2433rei_J_DG26_DC27BB2BB07790.20 BB07
2443rei_J_DC27_DA28BBBBB00520.32 BB00
2453rei_J_DA28_DG29B12BB04660.23 BB04
2463rei_J_DG29_DT30BBBBB00850.15 BB00
2473rei_J_DT30_DT31BBBBB00710.31 BB00
2483rei_J_DT31_DT32miBBB10320.35 BB10
2493rei_J_DT32_DC33B12BB04560.42 BB04
2503rei_J_DC33_DC34BB2BB07460.30 BB07
2513rei_J_DC34_DA35BB2BB07320.37 BB07
2523rei_J_DA35_DA36BBBBB00370.34 BB00
2533rei_J_DA36_DA37B-ABA08800.24 BA08
2543rei_J_DA37_DT38A-BAB05550.20 AB05
2553rei_J_DT38_DA39BBBBB00730.18 BB00
2563rei_J_DA39_DC40NANNANT00.30 BB10
2573rei_J_DC40_DA41A-BAB03430.45 AB03
2583rei_J_DA41_DC42BBwBB11600.27 BB11
2593rei_J_DC42_DT43BBwBB17580.24 BB17
2603rei_J_DT43_DT44miBBB10450.45 BB10
2613rei_J_DT44_DT45BBBBB01480.25 BB01
2623rei_J_DT45_DT46miBBB10610.35 BB10
2633rei_J_DT46_DG47BB2BB07240.24 BB07
2643rei_J_DG47_DG48NANNANT00.56 BB17
2653rei_J_DG48_DT49BBBBB00420.39 BB00
2663rei_J_DT49_DA50NANNANT00.67 BB07
2673rei_J_DA50_DG51miBBB10630.42 BB10
2683rei_J_DG51_DT52BBBBB01640.18 BB01
2693rei_J_DT52_DA53BBBBB00510.36 BB00
2703rei_J_DA53_DT54BBBBB00640.34 BB00
2713rei_J_DT54_DC55BBBBB00440.38 BB00
2723rei_J_DC55_DT56BBwBB17390.29 BB17
2733rei_J_DT56_DG57BB2BB07680.24 BB07
2743rei_J_DG57_DC58BBBBB00690.22 BB00
2753rei_J_DC58_DA59BB2BB07380.32 BB07
2763rei_J_DA59_DG60BBBBB00400.34 BB00
2773rei_J_DG60_DG61B-ABA08570.31 BA08
2783rei_J_DG61_DT62NANNANT00.28 BA05
2793rei_J_DT62_DG63A-BAB01250.39 AB01
2803rei_J_DG63_DG64miBBB10780.23 BB10
2813rei_J_DG64_DA65B12BB04360.50 BB04
2823rei_J_DA65_DT66BBBBB00130.49 BB00
2833rei_J_DT66_DA67miBBB13640.30 BB13
2843rei_J_DA67_DT68BBBBB00290.38 BB00
2853rei_J_DT68_DT69BBBBB00710.20 BB00
2863rei_J_DT69_DG70BBBBB00570.30 BB00
2873rei_J_DG70_DA71B12BB04790.24 BB04
2883rei_J_DA71_DT72BBBBB00900.21 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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