Conformers:
ABBIImiBZICOPNSYNN
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One RAMP protein binding different RNA substrates
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3qjj_R_G1_U2 | NAN | NANT | 0 | 1.55 |
| 02 | 3qjj_R_U2_U3 | NAN | NANT | 0 | 2.06 |
| 03 | 3qjj_R_U3_G4 | NAN | NANT | 0 | 0.84 |
| 04 | 3qjj_R_G4_A5 | NAN | NANT | 0 | 0.38 |
| 05 | 3qjj_R_A5_A6 | NAN | NANT | 0 | 1.38 |
| 06 | 3qjj_R_A6_A7 | NAN | NANT | 0 | 0.68 |
| 07 | 3qjj_R_A7_U8 | AAA | AA00 | 50 | 0.41 |
| 08 | 3qjj_R_U8_C9 | A-B | AB05 | 75 | 0.42 |
| 09 | 3qjj_R_C9_A10 | NAN | NANT | 0 | 0.98 |
| 10 | 3qjj_R_A10_G11 | NAN | NANT | 0 | 1.09 |
| 11 | 3qjj_R_G11_A12 | NAN | NANT | 0 | 1.94 |
| 12 | 3qjj_Q_G1_U2 | NAN | NANT | 0 | 0.78 |
| 13 | 3qjj_Q_U2_U3 | NAN | NANT | 0 | 1.92 |
| 14 | 3qjj_Q_U3_G4 | NAN | NANT | 0 | 0.86 |
| 15 | 3qjj_Q_G4_A5 | NAN | NANT | 0 | 0.49 |
| 16 | 3qjj_Q_A5_A6 | NAN | NANT | 0 | 1.39 |
| 17 | 3qjj_Q_A6_A7 | NAN | NANT | 0 | 0.51 |
| 18 | 3qjj_Q_A7_U8 | AAA | AA00 | 33 | 0.45 |
| 19 | 3qjj_Q_U8_C9 | A-B | AB05 | 49 | 0.38 |
| 20 | 3qjj_Q_C9_A10 | NAN | NANT | 0 | 1.10 |
| 21 | 3qjj_Q_A10_G11 | NAN | NANT | 0 | 1.77 |
| 22 | 3qjj_Q_G11_A12 | NAN | NANT | 0 | 2.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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