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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013q8q_T_8OG.A840_DG841SYNBBS1180.49 BBS1
023q8q_T_8OG.B840_DG841BBBBB00250.49 BB00
033q8q_T_DG841_DG842B-ABA09880.17 BA09
043q8q_T_DG842_DG843AAAAA04710.47 AA04
053q8q_T_DG843_DT844AAAAA00440.30 AA00
063q8q_T_DT844_DC845A-BAB01230.30 AB01
073q8q_T_DC845_DC846BBBBB00630.23 BB00
083q8q_T_DC846_DT847BBBBB00800.21 BB00
093q8q_P_DA867_DG868BBBBB01550.22 BB01
103q8q_P_DG868_DG869BBBBB01520.20 BB01
113q8q_P_DG869_DA870B-ABA05110.37 BA05
123q8q_P_DA870_DC871AAAAA00540.34 AA00
133q8q_P_DC871_DC872AAAAA00810.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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