Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of BmrR bound to puromycin
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3q3d_B_DG-12_DA-11 | miB | BB10 | 22 | 0.46 |
| 02 | 3q3d_B_DA-11_DC-10 | BBB | BB00 | 69 | 0.27 |
| 03 | 3q3d_B_DC-10_DC-9 | B-A | BA08 | 51 | 0.38 |
| 04 | 3q3d_B_DC-9_DC-8 | AAA | AA00 | 44 | 0.34 |
| 05 | 3q3d_B_DC-8_DT-7 | A-B | AB05 | 85 | 0.14 |
| 06 | 3q3d_B_DT-7_DC-6 | miB | BB15 | 55 | 0.33 |
| 07 | 3q3d_B_DC-6_DC-5 | NAN | NANT | 0 | 0.41 |
| 08 | 3q3d_B_DC-5_DC-4 | NAN | NANT | 0 | 0.46 |
| 09 | 3q3d_B_DC-4_DC-3 | BBB | BB01 | 38 | 0.27 |
| 10 | 3q3d_B_DC-3_DT-2 | BBB | BB00 | 28 | 0.37 |
| 11 | 3q3d_B_DT-2_DT1 | NAN | NANT | 0 | 0.37 |
| 12 | 3q3d_B_DT1_DA2 | BBB | BB00 | 65 | 0.38 |
| 13 | 3q3d_B_DA2_DG3 | B-A | BA09 | 45 | 0.49 |
| 14 | 3q3d_B_DG3_DG4 | NAN | NANT | 0 | 0.32 |
| 15 | 3q3d_B_DG4_DG5 | miB | BB15 | 89 | 0.15 |
| 16 | 3q3d_B_DG5_DG6 | BBB | BB00 | 65 | 0.23 |
| 17 | 3q3d_B_DG6_DA7 | miB | BB10 | 69 | 0.44 |
| 18 | 3q3d_B_DA7_DG8 | miB | BB10 | 62 | 0.26 |
| 19 | 3q3d_B_DG8_DG9 | NAN | NANT | 0 | 0.54 |
| 20 | 3q3d_B_DG9_DG10 | NAN | NANT | 0 | 0.38 |
| 21 | 3q3d_B_DG10_DT11 | BBB | BB00 | 43 | 0.44 |
| 22 | 3q3d_B_DT11_DC12 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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