Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3q24_C_DT3_DC4 | NAN | NANT | 0 | 2.68 |
| 02 | 3q24_C_DC4_DC5 | AAA | AA00 | 66 | 0.24 |
| 03 | 3q24_C_DC5_DA6 | AAA | AA00 | 74 | 0.16 |
| 04 | 3q24_C_DA6_DA7 | NAN | NANT | 0 | 0.70 |
| 05 | 3q24_C_DA7_DA8 | B12 | BB04 | 62 | 0.38 |
| 06 | 3q24_C_DA8_DA9 | NAN | NANT | 0 | 0.56 |
| 07 | 3q24_C_DA9_DG10 | NAN | NANT | 0 | 1.86 |
| 08 | 3q24_C_DG10_DA11 | BBB | BB00 | 46 | 0.25 |
| 09 | 3q24_C_DA11_DA12 | BBB | BB00 | 79 | 0.30 |
| 10 | 3q24_C_DA12_DG13 | B12 | BB04 | 37 | 0.43 |
| 11 | 3q24_C_DG13_DC14 | BBB | BB00 | 80 | 0.25 |
| 12 | 3q24_C_DC14_DG15 | NAN | NANT | 0 | 0.56 |
| 13 | 3q24_C_DG15_DG16 | NAN | NANT | 0 | 0.50 |
| 14 | 3q24_C_DG16_DA17 | NAN | NANT | 0 | 0.76 |
| 15 | 3q24_C_DA17_DG18 | BBB | BB00 | 50 | 0.41 |
| 16 | 3q24_C_DG18_DC19 | BB2 | BB07 | 71 | 0.30 |
| 17 | 3q24_C_DC19_DT20 | BBB | BB01 | 43 | 0.17 |
| 18 | 3q24_C_DT20_DT21 | A-B | AB03 | 81 | 0.23 |
| 19 | 3q24_C_DT21_DC22 | BBB | BB01 | 49 | 0.27 |
| 20 | 3q24_C_DC22_DT23 | NAN | NANT | 0 | 1.83 |
| 21 | 3q24_D_DA2_DT3 | NAN | NANT | 0 | 0.47 |
| 22 | 3q24_D_DT3_DC4 | NAN | NANT | 0 | 1.03 |
| 23 | 3q24_D_DC4_DC5 | AAA | AA00 | 52 | 0.27 |
| 24 | 3q24_D_DC5_DA6 | AAA | AA00 | 58 | 0.18 |
| 25 | 3q24_D_DA6_DA7 | NAN | NANT | 0 | 0.64 |
| 26 | 3q24_D_DA7_DA8 | B12 | BB04 | 88 | 0.18 |
| 27 | 3q24_D_DA8_DA9 | NAN | NANT | 0 | 0.52 |
| 28 | 3q24_D_DA9_DG10 | NAN | NANT | 0 | 1.04 |
| 29 | 3q24_D_DG10_DA11 | BBB | BB00 | 46 | 0.27 |
| 30 | 3q24_D_DA11_DA12 | BBB | BB00 | 79 | 0.28 |
| 31 | 3q24_D_DA12_DG13 | B12 | BB04 | 34 | 0.42 |
| 32 | 3q24_D_DG13_DC14 | BBB | BB00 | 79 | 0.27 |
| 33 | 3q24_D_DC14_DG15 | NAN | NANT | 0 | 0.50 |
| 34 | 3q24_D_DG15_DG16 | NAN | NANT | 0 | 0.51 |
| 35 | 3q24_D_DG16_DA17 | NAN | NANT | 0 | 0.76 |
| 36 | 3q24_D_DA17_DG18 | BBB | BB00 | 52 | 0.42 |
| 37 | 3q24_D_DG18_DC19 | BB2 | BB07 | 69 | 0.33 |
| 38 | 3q24_D_DC19_DT20 | B-A | BA05 | 79 | 0.22 |
| 39 | 3q24_D_DT20_DT21 | A-B | AB01 | 40 | 0.21 |
| 40 | 3q24_D_DT21_DC22 | B-A | BA05 | 88 | 0.19 |
| 41 | 3q24_D_DC22_DT23 | NAN | NANT | 0 | 1.95 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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