Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of SUVH5 SRA- methylated CHH DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3q0f_B_DC1_DT2 | NAN | NANT | 0 | 0.68 |
| 02 | 3q0f_B_DT2_DG3 | NAN | NANT | 0 | 0.30 |
| 03 | 3q0f_B_DG3_DA4 | BB2 | BB07 | 16 | 0.36 |
| 04 | 3q0f_B_DA4_DG5 | BBB | BB00 | 13 | 0.40 |
| 05 | 3q0f_B_DG5_DG6 | NAN | NANT | 0 | 1.33 |
| 06 | 3q0f_B_DG6_DA7 | NAN | NANT | 0 | 1.57 |
| 07 | 3q0f_B_DA7_DG8 | BBB | BB00 | 58 | 0.26 |
| 08 | 3q0f_B_DG8_DT9 | BBB | BB00 | 81 | 0.20 |
| 09 | 3q0f_B_DT9_DA10 | B12 | BB04 | 57 | 0.35 |
| 10 | 3q0f_B_DA10_DT11 | BBB | BB00 | 14 | 0.30 |
| 11 | 3q0f_C_DT1_DA2 | NAN | NANT | 0 | 0.50 |
| 12 | 3q0f_C_DA2_DC3 | NAN | NANT | 0 | 0.48 |
| 13 | 3q0f_C_DC3_DT4 | A-B | AB03 | 67 | 0.40 |
| 14 | 3q0f_C_DT4_5CM5 | NAN | NANT | 0 | 1.28 |
| 15 | 3q0f_C_5CM5_DC6 | NAN | NANT | 0 | 0.80 |
| 16 | 3q0f_C_DC6_DT7 | NAN | NANT | 0 | 0.48 |
| 17 | 3q0f_C_DT7_DC8 | BBB | BB00 | 41 | 0.26 |
| 18 | 3q0f_C_DC8_DA9 | BB2 | BB07 | 34 | 0.24 |
| 19 | 3q0f_C_DA9_DG10 | NAN | NANT | 0 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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