Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3q0d_B_DT.A1_DC.A2 | BBB | BB01 | 84 | 0.16 |
| 02 | 3q0d_B_DT.B1_DC.B2 | miB | BB10 | 57 | 0.41 |
| 03 | 3q0d_B_DC.A2_DC.A3 | BBB | BB00 | 24 | 0.37 |
| 04 | 3q0d_B_DC.B2_DC.B3 | A-B | AB03 | 83 | 0.32 |
| 05 | 3q0d_B_DC.A3_DA.A4 | BBB | BB00 | 80 | 0.25 |
| 06 | 3q0d_B_DC.B3_DA.B4 | BBB | BB00 | 86 | 0.23 |
| 07 | 3q0d_B_DA.A4_5CM.A5 | NAN | NANT | 0 | 1.39 |
| 08 | 3q0d_B_DA.B4_5CM.B5 | NAN | NANT | 0 | 0.57 |
| 09 | 3q0d_B_5CM.A5_DG.A6 | NAN | NANT | 0 | 0.99 |
| 10 | 3q0d_B_5CM.B5_DG.B6 | NAN | NANT | 0 | 0.86 |
| 11 | 3q0d_B_DG.A6_DT.A7 | BBB | BB00 | 29 | 0.53 |
| 12 | 3q0d_B_DG.B6_DT.B7 | NAN | NANT | 0 | 0.40 |
| 13 | 3q0d_B_DT.A7_DC.A8 | B-A | BA08 | 40 | 0.31 |
| 14 | 3q0d_B_DT.B7_DC.B8 | NAN | NANT | 0 | 0.40 |
| 15 | 3q0d_B_DC.A8_DA.A9 | A-B | AB01 | 42 | 0.29 |
| 16 | 3q0d_B_DC.B8_DA.B9 | BBB | BB01 | 28 | 0.37 |
| 17 | 3q0d_B_DA.A9_DG.A10 | BBw | BB11 | 65 | 0.41 |
| 18 | 3q0d_B_DA.B9_DG.B10 | B12 | BB04 | 10 | 0.31 |
| 19 | 3q0d_C_DC.A1_DT.A2 | NAN | NANT | 0 | 0.38 |
| 20 | 3q0d_C_DC.B1_DT.B2 | BBB | BB00 | 84 | 0.20 |
| 21 | 3q0d_C_DT.A2_DG.A3 | NAN | NANT | 0 | 0.60 |
| 22 | 3q0d_C_DT.B2_DG.B3 | B12 | BB04 | 31 | 0.22 |
| 23 | 3q0d_C_DG.A3_DA.A4 | BBB | BB00 | 25 | 0.32 |
| 24 | 3q0d_C_DG.B3_DA.B4 | BBB | BB00 | 23 | 0.28 |
| 25 | 3q0d_C_DA.A4_DC.A5 | NAN | NANT | 0 | 0.78 |
| 26 | 3q0d_C_DA.B4_DC.B5 | NAN | NANT | 0 | 0.72 |
| 27 | 3q0d_C_DC.A5_DG.A6 | NAN | NANT | 0 | 0.63 |
| 28 | 3q0d_C_DC.B5_DG.B6 | NAN | NANT | 0 | 0.60 |
| 29 | 3q0d_C_DG.A6_DT.A7 | NAN | NANT | 0 | 0.67 |
| 30 | 3q0d_C_DG.B6_DT.B7 | NAN | NANT | 0 | 0.56 |
| 31 | 3q0d_C_DT.A7_DG.A8 | B-A | BA08 | 59 | 0.37 |
| 32 | 3q0d_C_DT.B7_DG.B8 | B-A | BA05 | 90 | 0.33 |
| 33 | 3q0d_C_DG.A8_DG.A9 | A-B | AB03 | 9 | 0.26 |
| 34 | 3q0d_C_DG.B8_DG.B9 | A-B | AB01 | 20 | 0.25 |
| 35 | 3q0d_C_DG.A9_DA.A10 | NAN | NANT | 0 | 0.51 |
| 36 | 3q0d_C_DG.B9_DA.B10 | NAN | NANT | 0 | 0.53 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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