DNATCO v4.1: results

Human DNA polymerase kappa extending opposite a cis-syn thymine dimer

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	3pzp_P_DG1_DG2	NAN	NANT	0	0.60	AB02
02	3pzp_P_DG2_DG3	BBw	BB16	82	0.27	BB16
03	3pzp_P_DG3_DG4	miB	BB10	72	0.40	BB10
04	3pzp_P_DG4_DG5	miB	BB10	31	0.28	BB10
05	3pzp_P_DG5_DA6	A-B	AB01	47	0.44	AB01
06	3pzp_P_DA6_DA7	BBw	BB17	61	0.24	BB17
07	3pzp_P_DA7_DG8	BBB	BB01	42	0.31	BB01
08	3pzp_P_DG8_DG9	NAN	NANT	0	0.24	BB02
09	3pzp_P_DG9_DA10	BBB	BB00	75	0.28	BB00
10	3pzp_P_DA10_DC11	BBB	BB01	65	0.25	BB01
11	3pzp_P_DC11_DC12	B-A	BA01	39	0.23	BA01
12	3pzp_T_DC4_DC5	NAN	NANT	0	1.98	OP10
13	3pzp_T_DG7_DG8	B-A	BA10	45	0.29	BA10
14	3pzp_T_DG8_DT9	NAN	NANT	0	0.44	AA02
15	3pzp_T_DT9_DC10	BBB	BB01	10	0.30	BB01
16	3pzp_T_DC10_DC11	B12	BB05	39	0.28	BB05
17	3pzp_T_DC11_DT12	NAN	NANT	0	0.51	BB10
18	3pzp_T_DT12_DT13	NAN	NANT	0	0.35	BB17
19	3pzp_T_DT13_DC14	B-A	BA05	56	0.27	BA05
20	3pzp_T_DC14_DC15	NAN	NANT	0	0.51	BB10
21	3pzp_T_DC15_DC16	A-B	AB02	29	0.37	AB02
22	3pzp_T_DC16_DC17	B-A	BA08	81	0.19	BA08
23	3pzp_T_DC17_DC18	AAA	AA00	25	0.32	AA00
24	3pzp_Q_DG2_DG3	NAN	NANT	0	0.57	BB08
25	3pzp_Q_DG3_DG4	NAN	NANT	0	0.61	BB04
26	3pzp_Q_DG4_DG5	BBB	BB00	59	0.34	BB00
27	3pzp_Q_DG5_DA6	BBB	BB00	19	0.44	BB00
28	3pzp_Q_DA6_DA7	miB	BB15	19	0.45	BB15
29	3pzp_Q_DA7_DG8	BBB	BB00	42	0.30	BB00
30	3pzp_Q_DG8_DG9	NAN	NANT	0	0.37	BB10
31	3pzp_Q_DG9_DA10	miB	BB10	63	0.25	BB10
32	3pzp_Q_DA10_DC11	BBB	BB00	45	0.19	BB00
33	3pzp_Q_DC11_DC12	B-A	BA08	68	0.29	BA08
34	3pzp_U_DC4_DC5	NAN	NANT	0	1.22	OP31
35	3pzp_U_DG7_DG8	B-A	BA05	30	0.15	BA05
36	3pzp_U_DG8_DT9	A-B	AB03	24	0.48	AB03
37	3pzp_U_DT9_DC10	BBB	BB00	80	0.20	BB00
38	3pzp_U_DC10_DC11	B-A	BA08	78	0.31	BA08
39	3pzp_U_DC11_DT12	NAN	NANT	0	0.28	BB10
40	3pzp_U_DT12_DT13	NAN	NANT	0	0.31	BB17
41	3pzp_U_DT13_DC14	NAN	NANT	0	0.50	BB08
42	3pzp_U_DC14_DC15	BBw	BB16	68	0.25	BB16
43	3pzp_U_DC15_DC16	NAN	NANT	0	0.79	BB07
44	3pzp_U_DC16_DC17	NAN	NANT	0	0.65	BA17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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