DNATCO v4.1: results

First Crystal Structure of a RNA Nanosquare

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	3p59_A_C46_C47	AAA	AA08	38	0.50	AA08
02	3p59_A_C47_G48	AAA	AA00	21	0.42	AA00
03	3p59_A_G48_G49	AAA	AA04	62	0.29	AA04
04	3p59_A_G49_A50	AAA	AA00	24	0.34	AA00
05	3p59_A_A50_G51	AAA	AA00	62	0.11	AA00
06	3p59_A_G51_G52	AAw	AA10	45	0.37	AA10
07	3p59_A_G52_A53	AAA	AA08	78	0.24	AA08
08	3p59_A_A53_A54	AAA	AA08	89	0.17	AA08
09	3p59_A_A54_C55	AAA	AA08	84	0.22	AA08
10	3p59_A_C55_U56	NAN	NANT	0	1.12	OP01
11	3p59_A_U56_A57	AAA	AA08	33	0.64	AA08
12	3p59_A_A57_C58	AAA	AA08	83	0.17	AA08
13	3p59_A_C58_5BU59	AAA	AA00	59	0.23	AA00
14	3p59_A_5BU59_G60	AAA	AA00	81	0.19	AA00
15	3p59_B_C104_C105	AAA	AA00	57	0.21	AA00
16	3p59_B_C105_G106	AAA	AA03	55	0.33	AA03
17	3p59_B_G106_G107	AAA	AA04	96	0.22	AA04
18	3p59_B_G107_C108	AAA	AA08	84	0.16	AA08
19	3p59_B_C108_A109	AAA	AA00	80	0.23	AA00
20	3p59_B_A109_G110	NAN	NANT	0	0.54	AB04
21	3p59_B_G110_C111	OPN	OP12	46	0.28	OP12
22	3p59_B_C111_C112	AAA	AA00	47	0.31	AA00
23	3p59_B_C112_U113	NAN	NANT	0	0.77	AA10
24	3p59_C_C46_C47	AAA	AA04	86	0.23	AA04
25	3p59_C_C47_G48	AAA	AA00	82	0.19	AA00
26	3p59_C_G48_G49	AAA	AA00	77	0.25	AA00
27	3p59_C_G49_A50	AAA	AA04	72	0.37	AA04
28	3p59_C_A50_G51	AAA	AA00	68	0.14	AA00
29	3p59_C_G51_G52	AAA	AA08	60	0.15	AA08
30	3p59_C_G52_A53	AAA	AA00	46	0.33	AA00
31	3p59_C_A53_A54	NAN	NANT	0	0.46	AA04
32	3p59_C_A54_C55	NAN	NANT	0	0.84	AA05
33	3p59_C_C55_U56	NAN	NANT	0	1.44	OP31
34	3p59_C_U56_A57	NAN	NANT	0	0.79	IC02
35	3p59_C_A57_C58	AAw	AA06	62	0.55	AA06
36	3p59_C_C58_5BU59	NAN	NANT	0	0.74	AA01
37	3p59_C_5BU59_G60	NAN	NANT	0	0.76	AA10
38	3p59_D_C104_C105	NAN	NANT	0	0.28	AA04
39	3p59_D_C105_G106	NAN	NANT	0	0.60	AA10
40	3p59_D_G106_G107	AAA	AA04	63	0.39	AA04
41	3p59_D_G107_C108	AAw	AA11	43	0.28	AA11
42	3p59_D_C108_A109	AAw	AA11	28	0.59	AA11
43	3p59_D_A109_G110	NAN	NANT	0	0.67	AA07
44	3p59_D_G110_C111	NAN	NANT	0	1.91	OP27
45	3p59_D_C111_C112	AAA	AA00	67	0.23	AA00
46	3p59_D_C112_U113	AAA	AA00	92	0.20	AA00
47	3p59_E_C46_C47	NAN	NANT	0	0.63	AA04
48	3p59_E_C47_G48	AAw	AA01	77	0.22	AA01
49	3p59_E_G48_G49	NAN	NANT	0	0.55	AA01
50	3p59_E_G49_A50	AAu	AA07	31	0.57	AA07
51	3p59_E_A50_G51	AAA	AA03	75	0.36	AA03
52	3p59_E_G51_G52	AAA	AA00	65	0.30	AA00
53	3p59_E_G52_A53	AAA	AA08	35	0.40	AA08
54	3p59_E_A53_A54	NAN	NANT	0	0.50	AA01
55	3p59_E_A54_C55	NAN	NANT	0	1.27	OP22
56	3p59_E_C55_U56	NAN	NANT	0	0.56	OP26
57	3p59_E_U56_A57	AAA	AA00	60	0.25	AA00
58	3p59_E_A57_C58	AAA	AA04	91	0.21	AA04
59	3p59_E_C58_5BU59	AAA	AA08	90	0.24	AA08
60	3p59_E_5BU59_G60	A-B	AB05	65	0.27	AB05
61	3p59_F_C104_C105	AAA	AA04	41	0.39	AA04
62	3p59_F_C105_G106	AAA	AA04	81	0.15	AA04
63	3p59_F_G106_G107	AAA	AA00	74	0.19	AA00
64	3p59_F_G107_C108	AAA	AA08	81	0.23	AA08
65	3p59_F_C108_A109	AAA	AA08	86	0.22	AA08
66	3p59_F_A109_G110	AAA	AA00	56	0.13	AA00
67	3p59_F_G110_C111	AAA	AA00	89	0.17	AA00
68	3p59_F_C111_C112	NAN	NANT	0	1.89	OP10
69	3p59_F_C112_U113	AAA	AA00	82	0.24	AA00
70	3p59_G_C46_C47	AAA	AA00	37	0.32	AA00
71	3p59_G_C47_G48	AAA	AA00	71	0.14	AA00
72	3p59_G_G48_G49	AAw	AA10	78	0.24	AA10
73	3p59_G_G49_A50	AAu	AA12	47	0.40	AA12
74	3p59_G_A50_G51	AAA	AA08	53	0.26	AA08
75	3p59_G_G51_G52	AAA	AA00	40	0.23	AA00
76	3p59_G_G52_A53	AAA	AA08	66	0.29	AA08
77	3p59_G_A53_A54	AAw	AA10	42	0.22	AA10
78	3p59_G_A54_C55	AAA	AA08	68	0.25	AA08
79	3p59_G_C58_5BU59	AAA	AA00	32	0.30	AA00
80	3p59_G_5BU59_G60	NAN	NANT	0	0.32	AB04
81	3p59_H_C104_C105	AAA	AA00	26	0.22	AA00
82	3p59_H_C105_G106	AAA	AA00	61	0.23	AA00
83	3p59_H_G106_G107	NAN	NANT	0	0.52	AA04
84	3p59_H_G107_C108	AAA	AA00	30	0.22	AA00
85	3p59_H_C108_A109	AAA	AA08	62	0.31	AA08
86	3p59_H_A109_G110	A-B	AB05	36	0.24	AB05
87	3p59_H_G110_C111	OPN	OP12	54	0.33	OP12
88	3p59_H_C111_C112	AAA	AA04	46	0.41	AA04
89	3p59_H_C112_U113	AAA	AA04	82	0.27	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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