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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolution

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013oya_C_DA1_DT2NANNANT01.69 ZZS2
023oya_C_DT2_DT3BBwBB16400.71 BB16
033oya_C_DT3_DG4NANNANT00.54 OP17
043oya_C_DG4_DT5BBBBB01560.25 BB01
053oya_C_DT5_DC6BBBBB00150.25 BB00
063oya_C_DC6_DA7BB2BB07590.38 BB07
073oya_C_DA7_DT8B-ABA05720.18 BA05
083oya_C_DT8_DG9A-BAB03640.37 AB03
093oya_C_DG9_DG10BB2BB08730.27 BB08
103oya_C_DG10_DA11BBBBB00370.22 BB00
113oya_C_DA11_DA12BBBBB00900.21 BB00
123oya_C_DA12_DT13BBBBB01490.21 BB01
133oya_C_DT13_DT14BBBBB01390.23 BB01
143oya_C_DT14_DT15BBBBB00760.17 BB00
153oya_C_DT15_DC16BBBBB00920.17 BB00
163oya_C_DC16_DG17BBBBB00430.35 BB00
173oya_C_DG17_DC18B-ABA05660.24 BA05
183oya_C_DC18_DA19A-BAB01520.42 AB01
193oya_D_DT1_DG2NANNANT00.53 BB14
203oya_D_DG2_DC3BBBBB00170.41 BB00
213oya_D_DC3_DG4BBBBB00160.41 BB00
223oya_D_DG4_DA5BBBBB00330.15 BB00
233oya_D_DA5_DA6B12BB04210.18 BB04
243oya_D_DA6_DA7BBBBB00770.14 BB00
253oya_D_DA7_DT8BBBBB01920.20 BB01
263oya_D_DT8_DT9BBBBB00690.19 BB00
273oya_D_DT9_DC10BBBBB00880.15 BB00
283oya_D_DC10_DC11BBBBB00750.35 BB00
293oya_D_DC11_DA12BB2BB07810.27 BB07
303oya_D_DA12_DT13BBBBB00500.29 BB00
313oya_D_DT13_DG14BBBBB00710.25 BB00
323oya_D_DG14_DA15B12BB04750.27 BB04
333oya_D_DA15_DC16B-ABA08420.28 BA08
343oya_D_DC16_DA.A17NANNANT01.48 OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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