Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The structure of protozoan parasite Trichomonas vaginalis Myb2 in complex with MRE-2f-13 DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3osf_B_DC1_DT2 | A-B | AB01 | 57 | 0.25 |
| 02 | 3osf_B_DT2_DG3 | BBB | BB00 | 88 | 0.20 |
| 03 | 3osf_B_DG3_DT4 | BBB | BB00 | 78 | 0.19 |
| 04 | 3osf_B_DT4_DA5 | BB2 | BB07 | 70 | 0.31 |
| 05 | 3osf_B_DA5_DT6 | BBB | BB01 | 66 | 0.27 |
| 06 | 3osf_B_DT6_DC7 | BBB | BB00 | 63 | 0.20 |
| 07 | 3osf_B_DC7_DG8 | B12 | BB04 | 54 | 0.23 |
| 08 | 3osf_B_DG8_DT9 | B-A | BA05 | 89 | 0.22 |
| 09 | 3osf_B_DT9_DC10 | BBB | BB01 | 50 | 0.42 |
| 10 | 3osf_B_DC10_DT11 | BBB | BB01 | 60 | 0.19 |
| 11 | 3osf_B_DT11_DT12 | BBB | BB01 | 94 | 0.15 |
| 12 | 3osf_B_DT12_DG13 | BBB | BB00 | 21 | 0.22 |
| 13 | 3osf_C_DC1_DA2 | NAN | NANT | 0 | 0.66 |
| 14 | 3osf_C_DA2_DA3 | BBB | BB01 | 85 | 0.14 |
| 15 | 3osf_C_DA3_DG4 | BBB | BB01 | 78 | 0.20 |
| 16 | 3osf_C_DG4_DA5 | B-A | BA05 | 76 | 0.16 |
| 17 | 3osf_C_DA5_DC6 | BBB | BB01 | 22 | 0.32 |
| 18 | 3osf_C_DC6_DG7 | B12 | BB04 | 86 | 0.18 |
| 19 | 3osf_C_DG7_DA8 | BBB | BB00 | 88 | 0.14 |
| 20 | 3osf_C_DA8_DT9 | BBB | BB00 | 84 | 0.18 |
| 21 | 3osf_C_DT9_DA10 | B12 | BB04 | 72 | 0.28 |
| 22 | 3osf_C_DA10_DC11 | BBB | BB00 | 65 | 0.39 |
| 23 | 3osf_C_DC11_DA12 | BB2 | BB07 | 95 | 0.20 |
| 24 | 3osf_C_DA12_DG13 | BBB | BB00 | 84 | 0.23 |
| 25 | 3osf_E_DC1_DT2 | BBB | BB00 | 56 | 0.34 |
| 26 | 3osf_E_DT2_DG3 | BB2 | BB07 | 69 | 0.35 |
| 27 | 3osf_E_DG3_DT4 | BBB | BB00 | 69 | 0.24 |
| 28 | 3osf_E_DT4_DA5 | BB2 | BB07 | 83 | 0.31 |
| 29 | 3osf_E_DA5_DT6 | BBw | BB03 | 45 | 0.41 |
| 30 | 3osf_E_DT6_DC7 | BBB | BB00 | 72 | 0.38 |
| 31 | 3osf_E_DC7_DG8 | B12 | BB04 | 63 | 0.22 |
| 32 | 3osf_E_DG8_DT9 | B-A | BA05 | 72 | 0.23 |
| 33 | 3osf_E_DT9_DC10 | BBB | BB00 | 11 | 0.38 |
| 34 | 3osf_E_DC10_DT11 | BBB | BB00 | 77 | 0.24 |
| 35 | 3osf_E_DT11_DT12 | BBB | BB01 | 95 | 0.12 |
| 36 | 3osf_E_DT12_DG13 | BBB | BB00 | 71 | 0.23 |
| 37 | 3osf_F_DC1_DA2 | A-B | AB05 | 73 | 0.26 |
| 38 | 3osf_F_DA2_DA3 | B-A | BA05 | 79 | 0.26 |
| 39 | 3osf_F_DA3_DG4 | BBB | BB01 | 64 | 0.20 |
| 40 | 3osf_F_DG4_DA5 | BBB | BB01 | 92 | 0.17 |
| 41 | 3osf_F_DA5_DC6 | BBB | BB00 | 59 | 0.28 |
| 42 | 3osf_F_DC6_DG7 | B12 | BB04 | 84 | 0.18 |
| 43 | 3osf_F_DG7_DA8 | BBB | BB00 | 77 | 0.26 |
| 44 | 3osf_F_DA8_DT9 | BBB | BB00 | 91 | 0.17 |
| 45 | 3osf_F_DT9_DA10 | BB2 | BB07 | 74 | 0.35 |
| 46 | 3osf_F_DA10_DC11 | BBB | BB00 | 60 | 0.29 |
| 47 | 3osf_F_DC11_DA12 | BB2 | BB07 | 79 | 0.34 |
| 48 | 3osf_F_DA12_DG13 | BBB | BB00 | 60 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| group | |||||||||
| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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| N | ||||
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