Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of Saccharomyces cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 1 molecule of cognate RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3oin_C_G1_G2 | AAA | AA00 | 62 | 0.19 |
| 02 | 3oin_C_G2_G3 | AAw | AA10 | 63 | 0.15 |
| 03 | 3oin_C_G3_C4 | AAA | AA00 | 66 | 0.26 |
| 04 | 3oin_C_C4_U5 | A-B | AB05 | 85 | 0.20 |
| 05 | 3oin_C_U5_U6 | NAN | NANT | 0 | 1.07 |
| 06 | 3oin_C_U6_C7 | NAN | NANT | 0 | 1.31 |
| 07 | 3oin_C_C7_A8 | NAN | NANT | 0 | 1.11 |
| 08 | 3oin_C_A8_A9 | NAN | NANT | 0 | 0.90 |
| 09 | 3oin_C_A9_C10 | NAN | NANT | 0 | 0.64 |
| 10 | 3oin_C_C10_G11 | AAA | AA00 | 65 | 0.37 |
| 11 | 3oin_C_G11_C12 | AAw | AA01 | 80 | 0.12 |
| 12 | 3oin_C_C12_C13 | AAA | AA08 | 80 | 0.16 |
| 13 | 3oin_C_C13_C14 | AAA | AA00 | 75 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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