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Conformers: ABBIImiBZICOPNSYNN
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Human PARP-1 zinc finger 1 (Zn1) bound to DNA

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013oda_I_DG1_DC2NANNANT00.62 BB16
023oda_I_DC2_DC3miBBB15670.22 BB15
033oda_I_DC3_DT4BBBBB00100.25 BB00
043oda_I_DT4_DG5BB2BB07290.31 BB07
053oda_I_DG5_DC6BBBBB00480.24 BB00
063oda_I_DC6_DA7BB2BB07820.20 BB07
073oda_I_DA7_DG8BBBBB00820.14 BB00
083oda_I_DG8_DG9BBBBB01740.14 BB01
093oda_I_DG9_DC10NANNANT00.43 BA05
103oda_J_DG1_DC2NANNANT00.52 BB03
113oda_J_DC2_DC3NANNANT00.40 BB15
123oda_J_DC3_DT4NANNANT00.42 BA05
133oda_J_DT4_DG5NANNANT00.39 BB15
143oda_J_DG5_DC6BBBBB00580.25 BB00
153oda_J_DC6_DA7B12BB04720.24 BB04
163oda_J_DA7_DG8BBBBB01520.26 BB01
173oda_J_DG8_DG9BBBBB01560.25 BB01
183oda_J_DG9_DC10BBBBB01720.18 BB01
193oda_K_DG1_DC2BBBBB00890.14 BB00
203oda_K_DC2_DC3B-ABA05260.34 BA05
213oda_K_DC3_DT4A-BAB03920.20 AB03
223oda_K_DT4_DG5BBBBB00440.28 BB00
233oda_K_DG5_DC6BB2BB07450.31 BB07
243oda_K_DC6_DA7BBBBB00670.27 BB00
253oda_K_DA7_DG8BBBBB01230.29 BB01
263oda_K_DG8_DG9BBBBB01370.30 BB01
273oda_K_DG9_DC10BBBBB00860.20 BB00
283oda_L_DG1_DC2BBBBB00600.32 BB00
293oda_L_DC2_DC3BBBBB01910.11 BB01
303oda_L_DC3_DT4BBBBB01670.15 BB01
313oda_L_DT4_DG5BBBBB00370.42 BB00
323oda_L_DG5_DC6BBBBB00160.17 BB00
333oda_L_DC6_DA7BB2BB07280.32 BB07
343oda_L_DA7_DG8BBBBB01690.23 BB01
353oda_L_DG8_DG9BBBBB00800.27 BB00
363oda_L_DG9_DC10BBBBB01750.18 BB01
373oda_M_DG1_DC2miBBB10700.21 BB10
383oda_M_DC2_DC3NANNANT00.34 BA08
393oda_M_DC3_DT4NANNANT00.28 BB01
403oda_M_DT4_DG5BBBBB00530.25 BB00
413oda_M_DG5_DC6BBBBB00560.26 BB00
423oda_M_DC6_DA7BB2BB07910.20 BB07
433oda_M_DA7_DG8B-ABA01120.28 BA01
443oda_M_DG8_DG9BBBBB01450.29 BB01
453oda_M_DG9_DC10B-ABA05790.26 BA05
463oda_N_DG1_DC2NANNANT00.38 BB15
473oda_N_DC2_DC3miBBB10310.41 BB10
483oda_N_DC3_DT4BBBBB00380.21 BB00
493oda_N_DT4_DG5BB2BB07640.22 BB07
503oda_N_DG5_DC6NANNANT00.32 BB02
513oda_N_DC6_DA7NANNANT00.44 BA17
523oda_N_DA7_DG8BBBBB00810.22 BB00
533oda_N_DG8_DG9B-ABA08500.31 BA08
543oda_N_DG9_DC10BBBBB01640.23 BB01
553oda_O_DG1_DC2BBBBB00310.31 BB00
563oda_O_DC2_DC3BBBBB00510.23 BB00
573oda_O_DC3_DT4miBBB10350.34 BB10
583oda_O_DT4_DG5NANNANT00.51 BB15
593oda_O_DG5_DC6NANNANT00.40 BB15
603oda_O_DC6_DA7BB2BB07850.27 BB07
613oda_O_DA7_DG8B-ABA05590.34 BA05
623oda_O_DG8_DG9BBBBB01760.14 BB01
633oda_O_DG9_DC10B-ABA05430.25 BA05
643oda_P_DG1_DC2BBBBB00100.33 BB00
653oda_P_DC2_DC3B-ABA08750.41 BA08
663oda_P_DC3_DT4BBwBB1670.63 BB16
673oda_P_DT4_DG5NANNANT00.40 BB07
683oda_P_DG5_DC6BBBBB00230.35 BB00
693oda_P_DC6_DA7BB2BB07490.18 BB07
703oda_P_DA7_DG8BBBBB00830.16 BB00
713oda_P_DG8_DG9BBBBB00620.35 BB00
723oda_P_DG9_DC10BBBBB00510.20 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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