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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human PARP-1 zinc finger 1 (Zn1) bound to DNA

Results of the assignment of 144 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013od8_I_DG.A1_DC.A2NANNANT00.61 BB16
0023od8_I_DG.B1_DC.B2BBBBB00310.36 BB00
0033od8_I_DC.A2_DC.A3BBBBB00820.10 BB00
0043od8_I_DC.B2_DC.B3BBBBB00640.18 BB00
0053od8_I_DC.A3_DG.A4B12BB04700.21 BB04
0063od8_I_DC.B3_DG.B4miBBB15470.36 BB15
0073od8_I_DG.A4_DC.A5B12BB04790.21 BB04
0083od8_I_DG.B4_DC.B5B12BB04530.19 BB04
0093od8_I_DC.A5_DT.A6BBBBB00910.23 BB00
0103od8_I_DC.B5_DT.B6BBBBB00940.14 BB00
0113od8_I_DT.A6_DT.A7BBBBB01730.18 BB01
0123od8_I_DT.B6_DT.B7BBBBB01690.21 BB01
0133od8_I_DT.A7_DG.A8BBBBB01480.16 BB01
0143od8_I_DT.B7_DG.B8BBBBB01870.18 BB01
0153od8_I_DG.A8_DG.A9BBBBB00860.28 BB00
0163od8_I_DG.B8_DG.B9BBBBB00720.23 BB00
0173od8_I_DG.A9_DG.A10NANNANT00.59 BA08
0183od8_I_DG.B9_DG.B10BBBBB00860.12 BB00
0193od8_J_DC.A1_DC.A2BBBBB00370.32 BB00
0203od8_J_DC.B1_DC.B2A-BAB01380.33 AB01
0213od8_J_DC.A2_DC.A3BBBBB00690.20 BB00
0223od8_J_DC.B2_DC.B3BBBBB00900.09 BB00
0233od8_J_DC.A3_DA.A4miBBB15400.36 BB15
0243od8_J_DC.B3_DA.B4B12BB04910.15 BB04
0253od8_J_DA.A4_DA.A5B12BB04870.14 BB04
0263od8_J_DA.B4_DA.B5B12BB04830.17 BB04
0273od8_J_DA.A5_DG.A6BBBBB00740.17 BB00
0283od8_J_DA.B5_DG.B6BBBBB00880.17 BB00
0293od8_J_DG.A6_DC.A7BBBBB00500.21 BB00
0303od8_J_DG.B6_DC.B7BBBBB00180.25 BB00
0313od8_J_DC.A7_DG.A8BBBBB00620.19 BB00
0323od8_J_DC.B7_DG.B8BBBBB01420.19 BB01
0333od8_J_DG.A8_DG.A9BBBBB01700.20 BB01
0343od8_J_DG.B8_DG.B9BBBBB00860.28 BB00
0353od8_J_DG.A9_DC.A10BBBBB01830.17 BB01
0363od8_J_DG.B9_DC.B10BBBBB00290.34 BB00
0373od8_K_DG.A1_DC.A2BBBBB00680.21 BB00
0383od8_K_DG.B1_DC.B2BBBBB00690.20 BB00
0393od8_K_DC.A2_DC.A3BBBBB00840.16 BB00
0403od8_K_DC.B2_DC.B3BBBBB00760.25 BB00
0413od8_K_DC.A3_DG.A4B12BB04710.17 BB04
0423od8_K_DC.B3_DG.B4BB2BB07170.26 BB07
0433od8_K_DG.A4_DC.A5B12BB04620.29 BB04
0443od8_K_DG.B4_DC.B5BBBBB01130.25 BB01
0453od8_K_DC.A5_DT.A6BBBBB00900.18 BB00
0463od8_K_DC.B5_DT.B6BBBBB00760.19 BB00
0473od8_K_DT.A6_DT.A7BBBBB00840.23 BB00
0483od8_K_DT.B6_DT.B7BBBBB00960.14 BB00
0493od8_K_DT.A7_DG.A8BBBBB01860.15 BB01
0503od8_K_DT.B7_DG.B8BBBBB00670.17 BB00
0513od8_K_DG.A8_DG.A9BBBBB00710.38 BB00
0523od8_K_DG.B8_DG.B9BBBBB00700.33 BB00
0533od8_K_DG.A9_DG.A10BBBBB00810.16 BB00
0543od8_K_DG.B9_DG.B10BBBBB00760.14 BB00
0553od8_L_DC.A1_DC.A2BBBBB00920.15 BB00
0563od8_L_DC.B1_DC.B2BBBBB00740.18 BB00
0573od8_L_DC.A2_DC.A3BBBBB00750.24 BB00
0583od8_L_DC.B2_DC.B3BBBBB00870.15 BB00
0593od8_L_DC.A3_DA.A4BB2BB07160.27 BB07
0603od8_L_DC.B3_DA.B4B12BB04820.15 BB04
0613od8_L_DA.A4_DA.A5BBBBB00280.27 BB00
0623od8_L_DA.B4_DA.B5B12BB04730.25 BB04
0633od8_L_DA.A5_DG.A6BBBBB00750.21 BB00
0643od8_L_DA.B5_DG.B6BBBBB00890.15 BB00
0653od8_L_DG.A6_DC.A7BBBBB00930.15 BB00
0663od8_L_DG.B6_DC.B7BBBBB00870.23 BB00
0673od8_L_DC.A7_DG.A8BBBBB00640.19 BB00
0683od8_L_DC.B7_DG.B8BBBBB01940.17 BB01
0693od8_L_DG.A8_DG.A9BBBBB00710.32 BB00
0703od8_L_DG.B8_DG.B9BBBBB00670.40 BB00
0713od8_L_DG.A9_DC.A10BBBBB00820.16 BB00
0723od8_L_DG.B9_DC.B10BBBBB00810.20 BB00
0733od8_M_DG.A1_DC.A2BBBBB00200.28 BB00
0743od8_M_DG.B1_DC.B2BBBBB00450.33 BB00
0753od8_M_DC.A2_DC.A3BBBBB00860.14 BB00
0763od8_M_DC.B2_DC.B3BBBBB00770.14 BB00
0773od8_M_DC.A3_DG.A4BB2BB07490.24 BB07
0783od8_M_DC.B3_DG.B4BBBBB00260.25 BB00
0793od8_M_DG.A4_DC.A5BBBBB00780.14 BB00
0803od8_M_DG.B4_DC.B5B12BB04140.22 BB04
0813od8_M_DC.A5_DT.A6BBBBB00880.18 BB00
0823od8_M_DC.B5_DT.B6BBBBB00870.17 BB00
0833od8_M_DT.A6_DT.A7BBBBB00930.18 BB00
0843od8_M_DT.B6_DT.B7BBBBB00860.16 BB00
0853od8_M_DT.A7_DG.A8B12BB04730.22 BB04
0863od8_M_DT.B7_DG.B8BBBBB00920.15 BB00
0873od8_M_DG.A8_DG.A9BBBBB00740.29 BB00
0883od8_M_DG.B8_DG.B9BBBBB00740.32 BB00
0893od8_M_DG.A9_DG.A10B-ABA05750.33 BA05
0903od8_M_DG.B9_DG.B10BBBBB00750.15 BB00
0913od8_N_DC.A1_DC.A2BBwBB16490.63 BB16
0923od8_N_DC.B1_DC.B2BBBBB00810.23 BB00
0933od8_N_DC.A2_DC.A3BBBBB00750.13 BB00
0943od8_N_DC.B2_DC.B3BBBBB00900.14 BB00
0953od8_N_DC.A3_DA.A4BBBBB00360.26 BB00
0963od8_N_DC.B3_DA.B4B12BB04440.16 BB04
0973od8_N_DA.A4_DA.A5B12BB04230.20 BB04
0983od8_N_DA.B4_DA.B5BBBBB00700.15 BB00
0993od8_N_DA.A5_DG.A6BBBBB00870.19 BB00
1003od8_N_DA.B5_DG.B6BBBBB00590.21 BB00
1013od8_N_DG.A6_DC.A7BBBBB00820.21 BB00
1023od8_N_DG.B6_DC.B7BBBBB00920.19 BB00
1033od8_N_DC.A7_DG.A8BBBBB00900.16 BB00
1043od8_N_DC.B7_DG.B8B12BB04510.19 BB04
1053od8_N_DG.A8_DG.A9BBBBB00790.32 BB00
1063od8_N_DG.B8_DG.B9BBBBB00690.30 BB00
1073od8_N_DG.A9_DC.A10BBBBB01750.21 BB01
1083od8_N_DG.B9_DC.B10B-ABA05580.30 BA05
1093od8_O_DG.A1_DC.A2BBBBB00800.14 BB00
1103od8_O_DG.B1_DC.B2BBwBB17350.39 BB17
1113od8_O_DC.A2_DC.A3B12BB04670.28 BB04
1123od8_O_DC.B2_DC.B3BBBBB00450.25 BB00
1133od8_O_DC.A3_DG.A4NANNANT00.31 BB07
1143od8_O_DC.B3_DG.B4BBwBB17720.29 BB17
1153od8_O_DG.A4_DC.A5NANNANT00.36 BA17
1163od8_O_DG.B4_DC.B5BB2BB07680.28 BB07
1173od8_O_DC.A5_DT.A6BBBBB00660.25 BB00
1183od8_O_DC.B5_DT.B6BBBBB00790.21 BB00
1193od8_O_DT.A6_DT.A7BBBBB00720.20 BB00
1203od8_O_DT.B6_DT.B7BB2BB07410.32 BB07
1213od8_O_DT.A7_DG.A8BB2BB07730.15 BB07
1223od8_O_DT.B7_DG.B8BBBBB00750.20 BB00
1233od8_O_DG.A8_DG.A9BBBBB00880.19 BB00
1243od8_O_DG.B8_DG.B9BBBBB00800.31 BB00
1253od8_O_DG.A9_DG.A10B-ABA05490.25 BA05
1263od8_O_DG.B9_DG.B10BBBBB00920.12 BB00
1273od8_P_DC.A1_DC.A2BBBBB00140.37 BB00
1283od8_P_DC.B1_DC.B2BBBBB00930.09 BB00
1293od8_P_DC.A2_DC.A3BBBBB00750.26 BB00
1303od8_P_DC.B2_DC.B3BBBBB00530.17 BB00
1313od8_P_DC.A3_DA.A4BBwBB17530.31 BB17
1323od8_P_DC.B3_DA.B4NANNANT00.31 BB07
1333od8_P_DA.A4_DA.A5BB2BB07590.24 BB07
1343od8_P_DA.B4_DA.B5NANNANT00.50 BB07
1353od8_P_DA.A5_DG.A6BBBBB00750.16 BB00
1363od8_P_DA.B5_DG.B6BBBBB00310.34 BB00
1373od8_P_DG.A6_DC.A7B12BB04270.20 BB04
1383od8_P_DG.B6_DC.B7BBBBB00690.20 BB00
1393od8_P_DC.A7_DG.A8BBBBB00700.19 BB00
1403od8_P_DC.B7_DG.B8BB2BB07640.14 BB07
1413od8_P_DG.A8_DG.A9BBBBB00810.31 BB00
1423od8_P_DG.B8_DG.B9BBBBB00870.19 BB00
1433od8_P_DG.A9_DC.A10BBBBB00730.18 BB00
1443od8_P_DG.B9_DC.B10B-ABA05550.23 BA05
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers
δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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