DNATCO v4.1: results

Structure of N-terminal truncated Nop56/58 bound with L7Ae and box C/D RNA

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	3nvi_E_C2_U3	NAN	NANT	0	0.61	AB04
02	3nvi_E_U3_C4	NAN	NANT	0	1.90	OP31
03	3nvi_E_C4_U5	AAA	AA08	78	0.35	AA08
04	3nvi_E_U5_G6	A-B	AB05	51	0.45	AB05
05	3nvi_E_G6_A7	NAN	NANT	0	0.68	OP22
06	3nvi_E_A7_C8	OPN	OP24	84	0.22	OP24
07	3nvi_E_C8_C9	AAA	AA00	63	0.21	AA00
08	3nvi_E_C9_G10	AAA	AA00	75	0.24	AA00
09	3nvi_E_G10_A11	NAN	NANT	0	0.27	OP04
10	3nvi_E_A11_A12	AAw	AA06	52	0.43	AA06
11	3nvi_E_A12_A13	AAA	AA00	21	0.27	AA00
12	3nvi_E_A13_G14	AAw	AA05	84	0.29	AA05
13	3nvi_E_G14_G15	AAA	AA08	73	0.13	AA08
14	3nvi_E_G15_C16	AAA	AA03	70	0.26	AA03
15	3nvi_E_C16_G17	NAN	NANT	0	1.05	BB2S
16	3nvi_E_G17_U18	NAN	NANT	0	0.54	OP21
17	3nvi_E_U18_G19	OPN	OP20	30	0.53	OP20
18	3nvi_E_G19_A20	NAN	NANT	0	0.66	OP15
19	3nvi_E_A20_U21	AAA	AA04	74	0.38	AA04
20	3nvi_E_U21_G22	AAA	AA00	81	0.16	AA00
21	3nvi_E_G22_A23	NAN	NANT	0	0.48	AB2S
22	3nvi_E_A23_G24	NAN	NANT	0	1.00	OP03
23	3nvi_E_G24_C25	NAN	NANT	0	1.63	OP17
24	3nvi_F_C2_U3	NAN	NANT	0	0.53	IC01
25	3nvi_F_U3_C4	NAN	NANT	0	1.87	OP31
26	3nvi_F_C4_U5	AAA	AA00	63	0.37	AA00
27	3nvi_F_U5_G6	A-B	AB05	71	0.42	AB05
28	3nvi_F_G6_A7	OPN	OP22	17	0.66	OP22
29	3nvi_F_A7_C8	OPN	OP24	81	0.25	OP24
30	3nvi_F_C8_C9	AAA	AA00	80	0.22	AA00
31	3nvi_F_C9_G10	AAA	AA00	68	0.22	AA00
32	3nvi_F_G10_A11	OPN	OP04	52	0.24	OP04
33	3nvi_F_A11_A12	AAw	AA06	62	0.40	AA06
34	3nvi_F_A12_A13	AAA	AA00	31	0.29	AA00
35	3nvi_F_A13_G14	AAw	AA05	78	0.31	AA05
36	3nvi_F_G14_G15	AAA	AA00	73	0.15	AA00
37	3nvi_F_G15_C16	AAA	AA03	78	0.25	AA03
38	3nvi_F_C16_G17	NAN	NANT	0	1.00	BB2S
39	3nvi_F_G17_U18	NAN	NANT	0	0.56	OP21
40	3nvi_F_U18_G19	OPN	OP20	63	0.54	OP20
41	3nvi_F_G19_A20	OPN	OP10	47	0.31	OP10
42	3nvi_F_A20_U21	AAA	AA00	38	0.36	AA00
43	3nvi_F_U21_G22	AAA	AA08	95	0.18	AA08
44	3nvi_F_G22_A23	NAN	NANT	0	0.43	AB2S
45	3nvi_F_A23_G24	NAN	NANT	0	0.98	OP09
46	3nvi_F_G24_C25	NAN	NANT	0	1.56	OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

Z

N

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible