DNATCO v4.1: results

Crystal structure of a signal sequence bound to the signal recognition particle

Results of the assignment of 135 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3ndb_M_G123_U124	AAA	AA00	54	0.32	AA00
002	3ndb_M_U124_C125	NAN	NANT	0	0.56	AA01
003	3ndb_M_C125_U126	NAN	NANT	0	0.51	AA08
004	3ndb_M_U126_C127	NAN	NANT	0	0.39	AA03
005	3ndb_M_C127_G128	AAA	AA08	23	0.70	AA08
006	3ndb_M_G128_U129	AAA	AA08	46	0.51	AA08
007	3ndb_M_U129_C130	NAN	NANT	0	1.20	AA03
008	3ndb_M_C130_C131	NAN	NANT	0	0.67	AA11
009	3ndb_M_C131_C132	NAN	NANT	0	0.57	AA03
010	3ndb_M_C132_G133	AAA	AA04	38	0.47	AA04
011	3ndb_M_G133_U134	AAw	AA11	67	0.52	AA11
012	3ndb_M_U134_G135	NAN	NANT	0	0.80	AA10
013	3ndb_M_G135_G136	NAN	NANT	0	0.69	AA10
014	3ndb_M_G136_G137	NAN	NANT	0	0.70	AA10
015	3ndb_M_G137_G138	NAN	NANT	0	0.27	AA03
016	3ndb_M_G138_C139	NAN	NANT	0	0.56	AA04
017	3ndb_M_C139_U140	NAN	NANT	0	2.17	OP23
018	3ndb_M_U140_C141	NAN	NANT	0	2.20	OP17
019	3ndb_M_C141_G142	AAA	AA04	79	0.29	AA04
020	3ndb_M_G142_G143	AAA	AA08	36	0.26	AA08
021	3ndb_M_G143_C144	AAA	AA00	52	0.30	AA00
022	3ndb_M_C144_G145	AAA	AA00	75	0.19	AA00
023	3ndb_M_G145_G146	NAN	NANT	0	0.47	AA09
024	3ndb_M_G146_U147	NAN	NANT	0	0.70	OP16
025	3ndb_M_U147_G148	AAA	AA08	65	0.21	AA08
026	3ndb_M_G148_G149	AAA	AA08	47	0.18	AA08
027	3ndb_M_G149_G150	AAA	AA00	15	0.27	AA00
028	3ndb_M_G150_G151	NAN	NANT	0	0.32	AA06
029	3ndb_M_G151_G152	AAw	AA11	48	0.40	AA11
030	3ndb_M_G152_A153	NAN	NANT	0	0.59	AA10
031	3ndb_M_A153_G154	AAw	AA06	24	0.62	AA06
032	3ndb_M_G154_C155	AAA	AA08	55	0.32	AA08
033	3ndb_M_C155_A156	AAw	AA11	40	0.37	AA11
034	3ndb_M_A156_U157	AAA	AA08	29	0.41	AA08
035	3ndb_M_U157_C158	AAA	AA04	79	0.19	AA04
036	3ndb_M_C158_U159	AAA	AA08	54	0.24	AA08
037	3ndb_M_U159_C160	AAA	AA08	70	0.21	AA08
038	3ndb_M_C160_C161	AAA	AA04	94	0.30	AA04
039	3ndb_M_C161_U162	AAA	AA08	75	0.18	AA08
040	3ndb_M_U162_G163	NAN	NANT	0	0.49	AA10
041	3ndb_M_G163_U164	NAN	NANT	0	1.00	OP17
042	3ndb_M_U164_A165	NAN	NANT	0	1.40	IC03
043	3ndb_M_A165_G166	AAA	AA04	42	0.55	AA04
044	3ndb_M_G166_G167	NAN	NANT	0	0.61	AA05
045	3ndb_M_G167_G168	AAA	AA00	26	0.43	AA00
046	3ndb_M_G168_G169	NAN	NANT	0	0.35	AA03
047	3ndb_M_G169_A170	AAA	AA00	22	0.23	AA00
048	3ndb_M_A170_G171	AAA	AA08	75	0.16	AA08
049	3ndb_M_G171_A172	AAA	AA00	68	0.23	AA00
050	3ndb_M_A172_U173	AAw	AA01	22	0.33	AA01
051	3ndb_M_U173_G174	AAA	AA08	72	0.27	AA08
052	3ndb_M_G174_U175	AAA	AA00	57	0.28	AA00
053	3ndb_M_U175_A176	NAN	NANT	0	1.75	OP29
054	3ndb_M_A176_A177	NAN	NANT	0	0.61	IC06
055	3ndb_M_A177_C178	OPN	OP12	69	0.32	OP12
056	3ndb_M_C178_C179	AAA	AA04	79	0.24	AA04
057	3ndb_M_C179_C180	AAA	AA08	39	0.27	AA08
058	3ndb_M_C180_C181	AAA	AA08	20	0.33	AA08
059	3ndb_M_C181_C182	AAA	AA08	78	0.23	AA08
060	3ndb_M_C182_U183	AAA	AA00	71	0.22	AA00
061	3ndb_M_U183_U184	AAA	AA04	59	0.41	AA04
062	3ndb_M_U184_U185	NAN	NANT	0	0.46	OP03
063	3ndb_M_U185_A186	NAN	NANT	0	0.53	AB2S
064	3ndb_M_A186_C187	NAN	NANT	0	1.71	OPS1
065	3ndb_M_C187_C188	NAN	NANT	0	0.38	AA06
066	3ndb_M_C188_U189	AAA	AA08	20	0.29	AA08
067	3ndb_M_U189_G190	AAA	AA08	73	0.27	AA08
068	3ndb_M_G190_C191	NAN	NANT	0	0.32	AA06
069	3ndb_M_C191_C192	AAA	AA03	16	0.33	AA03
070	3ndb_M_C192_G193	NAN	NANT	0	0.54	AA05
071	3ndb_M_G193_A194	NAN	NANT	0	2.20	OP19
072	3ndb_M_A194_A195	NAN	NANT	0	0.53	OP14
073	3ndb_M_A195_C196	NAN	NANT	0	0.59	AA10
074	3ndb_M_C196_C197	NAN	NANT	0	0.54	AA01
075	3ndb_M_C197_C198	NAN	NANT	0	1.91	IC04
076	3ndb_M_C198_C199	AAA	AA04	67	0.34	AA04
077	3ndb_M_C199_G200	AAA	AA03	76	0.28	AA03
078	3ndb_M_G200_C201	AAA	AA00	56	0.23	AA00
079	3ndb_M_C201_C202	NAN	NANT	0	0.50	AA10
080	3ndb_M_C202_A203	NAN	NANT	0	0.31	AA13
081	3ndb_M_A203_G204	AAA	AA08	45	0.45	AA08
082	3ndb_M_G204_G205	AAA	AA00	27	0.39	AA00
083	3ndb_M_G205_C206	AAA	AA00	51	0.31	AA00
084	3ndb_M_C206_C207	AAA	AA08	65	0.21	AA08
085	3ndb_M_C207_C208	AAA	AA00	28	0.29	AA00
086	3ndb_M_C208_G209	AAA	AA00	58	0.36	AA00
087	3ndb_M_G209_G210	OPN	OP03	65	0.13	OP03
088	3ndb_M_G210_A211	AAA	AA08	34	0.37	AA08
089	3ndb_M_A211_A212	AAA	AA08	70	0.28	AA08
090	3ndb_M_A212_G213	AAw	AA05	66	0.28	AA05
091	3ndb_M_G213_G214	AAw	AA11	23	0.47	AA11
092	3ndb_M_G214_G215	AAA	AA00	64	0.26	AA00
093	3ndb_M_G215_A216	AAA	AA04	85	0.17	AA04
094	3ndb_M_A216_G217	AAA	AA08	50	0.45	AA08
095	3ndb_M_G217_C218	AAu	AA07	71	0.35	AA07
096	3ndb_M_C218_A219	AAA	AA08	60	0.28	AA08
097	3ndb_M_A219_A220	AAA	AA08	73	0.43	AA08
098	3ndb_M_A220_C221	NAN	NANT	0	0.37	AA06
099	3ndb_M_C221_G222	AAA	AA00	54	0.32	AA00
100	3ndb_M_G222_G223	NAN	NANT	0	0.31	AA01
101	3ndb_M_G223_U224	AAA	AA04	14	0.35	AA04
102	3ndb_M_U224_A225	AAA	AA00	69	0.21	AA00
103	3ndb_M_A225_G226	AAw	AA05	46	0.33	AA05
104	3ndb_M_G226_G227	NAN	NANT	0	0.69	AA11
105	3ndb_M_G227_C228	AAA	AA00	49	0.38	AA00
106	3ndb_M_C228_A229	NAN	NANT	0	0.35	AA06
107	3ndb_M_A229_G230	AAA	AA00	39	0.31	AA00
108	3ndb_M_G230_G231	AAA	AA00	40	0.29	AA00
109	3ndb_M_G231_A232	AAA	AA04	70	0.27	AA04
110	3ndb_M_A232_C233	AAA	AA08	77	0.26	AA08
111	3ndb_M_C233_G234	AAA	AA08	82	0.18	AA08
112	3ndb_M_G234_U235	AAA	AA00	65	0.25	AA00
113	3ndb_M_U235_C236	A-B	AB05	49	0.41	AB05
114	3ndb_M_C236_G237	B-A	BA10	67	0.33	BA10
115	3ndb_M_G237_G238	NAN	NANT	0	0.41	AA10
116	3ndb_M_G238_C239	NAN	NANT	0	0.93	BB12
117	3ndb_M_C239_G240	NAN	NANT	0	1.48	OP06
118	3ndb_M_G240_C241	NAN	NANT	0	1.27	OP31
119	3ndb_M_C241_U242	NAN	NANT	0	0.65	AA06
120	3ndb_M_U242_C243	NAN	NANT	0	1.34	ZZ01
121	3ndb_M_C243_A244	NAN	NANT	0	0.77	AA06
122	3ndb_M_A244_C245	NAN	NANT	0	0.84	AA04
123	3ndb_M_C245_G246	NAN	NANT	0	0.44	AA10
124	3ndb_M_G246_G247	AAw	AA10	24	0.38	AA10
125	3ndb_M_G247_G248	AAA	AA08	57	0.36	AA08
126	3ndb_M_G248_G249	AAA	AA08	58	0.23	AA08
127	3ndb_M_G249_G250	NAN	NANT	0	1.31	OP08
128	3ndb_M_G250_U251	NAN	NANT	0	1.01	IC03
129	3ndb_M_U251_G252	NAN	NANT	0	0.74	AB02
130	3ndb_M_G252_C253	NAN	NANT	0	0.34	AA11
131	3ndb_M_C253_G254	NAN	NANT	0	0.89	AA07
132	3ndb_M_G254_G255	NAN	NANT	0	0.50	BA09
133	3ndb_M_G255_G256	NAN	NANT	0	0.79	AA11
134	3ndb_M_G256_A257	NAN	NANT	0	0.65	AA08
135	3ndb_M_A257_C258	NAN	NANT	0	0.58	AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 135 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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