Conformers:
ABBIImiBZICOPNSYNN
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Binary complex of a DNA polymerase lambda loop mutant
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3mgh_T_DC1_DG2 | A-B | AB01 | 49 | 0.30 |
| 02 | 3mgh_T_DG2_DG3 | BBB | BB00 | 80 | 0.22 |
| 03 | 3mgh_T_DG3_DC4 | B-A | BA05 | 78 | 0.15 |
| 04 | 3mgh_T_DC4_DA5 | NAN | NANT | 0 | 1.28 |
| 05 | 3mgh_T_DA5_DG6 | BBB | BB00 | 83 | 0.22 |
| 06 | 3mgh_T_DG6_DT7 | BBB | BB00 | 52 | 0.35 |
| 07 | 3mgh_T_DT7_DA8 | NAN | NANT | 0 | 0.61 |
| 08 | 3mgh_T_DA8_DC9 | B-A | BA08 | 67 | 0.38 |
| 09 | 3mgh_T_DC9_DT10 | BBB | BB01 | 56 | 0.25 |
| 10 | 3mgh_T_DT10_DG11 | BBB | BB00 | 74 | 0.21 |
| 11 | 3mgh_P_DC1_DA2 | A-B | AB01 | 51 | 0.27 |
| 12 | 3mgh_P_DA2_DG3 | BBB | BB01 | 57 | 0.15 |
| 13 | 3mgh_P_DG3_DT4 | BBB | BB01 | 23 | 0.18 |
| 14 | 3mgh_P_DT4_DA5 | BBB | BB01 | 60 | 0.22 |
| 15 | 3mgh_P_DA5_DC6 | NAN | NANT | 0 | 0.35 |
| 16 | 3mgh_D_DG1_DC2 | A-B | AB05 | 37 | 0.31 |
| 17 | 3mgh_D_DC2_DC3 | BBB | BB00 | 88 | 0.12 |
| 18 | 3mgh_D_DC3_DG4 | BBB | BB00 | 70 | 0.32 |
| 19 | 3mgh_E_DC1_DG2 | NAN | NANT | 0 | 0.38 |
| 20 | 3mgh_E_DG2_DG3 | BBB | BB00 | 63 | 0.29 |
| 21 | 3mgh_E_DG3_DC4 | B-A | BA05 | 60 | 0.20 |
| 22 | 3mgh_E_DC4_DA5 | NAN | NANT | 0 | 1.34 |
| 23 | 3mgh_E_DA5_DG6 | BBB | BB00 | 84 | 0.20 |
| 24 | 3mgh_E_DG6_DT7 | BBB | BB01 | 62 | 0.32 |
| 25 | 3mgh_E_DT7_DA8 | B12 | BB04 | 32 | 0.41 |
| 26 | 3mgh_E_DA8_DC9 | B-A | BA08 | 60 | 0.38 |
| 27 | 3mgh_E_DC9_DT10 | BBB | BB01 | 54 | 0.25 |
| 28 | 3mgh_E_DT10_DG11 | BBB | BB01 | 80 | 0.24 |
| 29 | 3mgh_F_DC1_DA2 | BBB | BB00 | 68 | 0.30 |
| 30 | 3mgh_F_DA2_DG3 | BBB | BB00 | 76 | 0.12 |
| 31 | 3mgh_F_DG3_DT4 | BBw | BB02 | 48 | 0.18 |
| 32 | 3mgh_F_DT4_DA5 | BBB | BB01 | 77 | 0.34 |
| 33 | 3mgh_F_DA5_DC6 | BBB | BB01 | 70 | 0.32 |
| 34 | 3mgh_G_DG1_DC2 | A-B | AB05 | 16 | 0.27 |
| 35 | 3mgh_G_DC2_DC3 | BBB | BB00 | 69 | 0.11 |
| 36 | 3mgh_G_DC3_DG4 | BBB | BB00 | 44 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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