Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3m9m_P_DG1_DG2 | miB | BB15 | 90 | 0.28 |
| 02 | 3m9m_P_DG2_DG3 | B12 | BB04 | 66 | 0.19 |
| 03 | 3m9m_P_DG3_DG4 | BBB | BB00 | 44 | 0.24 |
| 04 | 3m9m_P_DG4_DG5 | BBw | BB11 | 73 | 0.33 |
| 05 | 3m9m_P_DG5_DA6 | NAN | NANT | 0 | 0.91 |
| 06 | 3m9m_P_DA6_DA7 | NAN | NANT | 0 | 0.54 |
| 07 | 3m9m_P_DA7_DG8 | miB | BB10 | 16 | 0.44 |
| 08 | 3m9m_P_DG8_DG9 | NAN | NANT | 0 | 0.54 |
| 09 | 3m9m_P_DG9_DA10 | NAN | NANT | 0 | 0.77 |
| 10 | 3m9m_P_DA10_DA11 | BBB | BB00 | 33 | 0.44 |
| 11 | 3m9m_P_DA11_DA12 | BBB | BB00 | 28 | 0.41 |
| 12 | 3m9m_T_DG3_DG4 | NAN | NANT | 0 | 1.24 |
| 13 | 3m9m_T_DC5_DT6 | SYN | BBS1 | 21 | 0.38 |
| 14 | 3m9m_T_DT6_DT7 | B12 | BB04 | 71 | 0.31 |
| 15 | 3m9m_T_DT7_DT8 | NAN | NANT | 0 | 0.50 |
| 16 | 3m9m_T_DT8_DC9 | NAN | NANT | 0 | 0.66 |
| 17 | 3m9m_T_DC9_DC10 | BBw | BB02 | 20 | 0.49 |
| 18 | 3m9m_T_DC10_DT11 | NAN | NANT | 0 | 0.53 |
| 19 | 3m9m_T_DT11_DT12 | NAN | NANT | 0 | 0.53 |
| 20 | 3m9m_T_DT12_DC13 | BBB | BB00 | 54 | 0.34 |
| 21 | 3m9m_T_DC13_DC14 | NAN | NANT | 0 | 0.58 |
| 22 | 3m9m_T_DC14_DC15 | NAN | NANT | 0 | 0.49 |
| 23 | 3m9m_T_DC15_DC16 | BBB | BB00 | 24 | 0.32 |
| 24 | 3m9m_T_DC16_DC17 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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