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Conformers: ABBIImiBZICOPNSYNN
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RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013lzi_T_DT1_DC2NANNANT01.38 AA11
023lzi_T_DC2_DA3NANNANT01.09 ZZS2
033lzi_T_DA3_8OG4NANNANT01.25 OP17
043lzi_T_8OG4_DG5SYNAAS1610.45 AAS1
053lzi_T_DG5_DT6A-BAB05570.29 AB05
063lzi_T_DT6_DA7BBBBB00680.29 BB00
073lzi_T_DA7_DA8BBBBB00780.27 BB00
083lzi_T_DA8_DG9B12BB04610.27 BB04
093lzi_T_DG9_DC10BBBBB00770.25 BB00
103lzi_T_DC10_DA11BBBBB00840.31 BB00
113lzi_T_DA11_DG12B-ABA05680.24 BA05
123lzi_T_DG12_DT13BBBBB00100.42 BB00
133lzi_T_DT13_DC14BBBBB00910.17 BB00
143lzi_T_DC14_DC15BBBBB01740.20 BB01
153lzi_T_DC15_DG16BBBBB00720.26 BB00
163lzi_T_DG16_DC17BBBBB00480.31 BB00
173lzi_T_DC17_DG18NANNANT01.00 OP17
183lzi_P_DG103_DC104BB2BB07250.45 BB07
193lzi_P_DC104_DG105NANNANT00.62 BA17
203lzi_P_DG105_DG106A-BAB02350.40 AB02
213lzi_P_DG106_DA107BBBBB00750.25 BB00
223lzi_P_DA107_DC108NANNANT00.48 BA09
233lzi_P_DC108_DT109A-BAB05410.25 AB05
243lzi_P_DT109_DG110BBBBB01600.16 BB01
253lzi_P_DG110_DC111B-ABA05790.23 BA05
263lzi_P_DC111_DT112BBBBB01790.17 BB01
273lzi_P_DT112_DT113BBBBB01450.34 BB01
283lzi_P_DT113_DA114BBBBB00380.27 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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