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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2)

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013lz1_I_DA-72_DT-71BBwBB17520.34 BB17
0023lz1_I_DT-71_DC-70B-ABA01210.33 BA01
0033lz1_I_DC-70_DG-69NANNANT00.45 AB03
0043lz1_I_DG-69_DA-68miBBB10350.42 BB10
0053lz1_I_DA-68_DT-67B-ABA10280.67 BA10
0063lz1_I_DT-67_DG-66NANNANT00.49 BB16
0073lz1_I_DG-66_DT-65BBBBB00620.33 BB00
0083lz1_I_DT-65_DA-64BBBBB00350.25 BB00
0093lz1_I_DA-64_DT-63BBwBB17720.28 BB17
0103lz1_I_DT-63_DA-62miBBB14790.42 BB14
0113lz1_I_DA-62_DT-61BB2BB07290.41 BB07
0123lz1_I_DT-61_DA-60miBBB10500.56 BB10
0133lz1_I_DA-60_DT-59NANNANT00.43 BB17
0143lz1_I_DT-59_DC-58NANNANT00.68 BB07
0153lz1_I_DC-58_DT-57NANNANT00.36 BA17
0163lz1_I_DT-57_DG-56BB2BB07130.35 BB07
0173lz1_I_DG-56_DA-55B12BB04440.43 BB04
0183lz1_I_DA-55_DC-54B12BB04370.24 BB04
0193lz1_I_DC-54_DA-53B-ABA08360.54 BA08
0203lz1_I_DA-53_DC-52NANNANT00.47 BB10
0213lz1_I_DC-52_DG-51BBBBB00290.35 BB00
0223lz1_I_DG-51_DT-50BBwBB17400.38 BB17
0233lz1_I_DT-50_DG-49BBBBB00860.31 BB00
0243lz1_I_DG-49_DC-48NANNANT00.41 BA17
0253lz1_I_DC-48_DC-47B12BB04210.53 BB04
0263lz1_I_DC-47_DT-46NANNANT00.45 BB07
0273lz1_I_DT-46_DG-45B12BB04410.38 BB04
0283lz1_I_DG-45_DG-44BBBBB00670.29 BB00
0293lz1_I_DG-44_DA-43miBBB10580.26 BB10
0303lz1_I_DA-43_DG-42miBBB10420.35 BB10
0313lz1_I_DG-42_DA-41BBwBB02430.34 BB02
0323lz1_I_DA-41_DC-40BBBBB00590.32 BB00
0333lz1_I_DC-40_DT-39B12BB04430.26 BB04
0343lz1_I_DT-39_DA-38NANNANT00.29 BB17
0353lz1_I_DA-38_DG-37BBBBB00210.41 BB00
0363lz1_I_DG-37_DG-36NANNANT00.40 BB07
0373lz1_I_DG-36_DG-35NANNANT00.66 BB10
0383lz1_I_DG-35_DA-34NANNANT00.40 BB10
0393lz1_I_DA-34_DG-33BB2BB07480.24 BB07
0403lz1_I_DG-33_DT-32miBBB10360.29 BB10
0413lz1_I_DT-32_DA-31miBBB10780.35 BB10
0423lz1_I_DA-31_DA-30miBBB10570.41 BB10
0433lz1_I_DA-30_DT-29BBwBB17710.19 BB17
0443lz1_I_DT-29_DC-28BBwBB17580.49 BB17
0453lz1_I_DC-28_DC-27NANNANT00.61 BB07
0463lz1_I_DC-27_DC-26NANNANT00.69 BA08
0473lz1_I_DC-26_DC-25BBwBB16590.51 BB16
0483lz1_I_DC-25_DT-24NANNANT00.26 BA17
0493lz1_I_DT-24_DT-23B-ABA05210.37 BA05
0503lz1_I_DT-23_DG-22BBBBB00190.24 BB00
0513lz1_I_DG-22_DG-21miBBB10770.24 BB10
0523lz1_I_DG-21_DC-20miBBB10770.41 BB10
0533lz1_I_DC-20_DG-19B12BB04100.33 BB04
0543lz1_I_DG-19_DG-18BB2BB07560.42 BB07
0553lz1_I_DG-18_DT-17BBBBB00820.24 BB00
0563lz1_I_DT-17_DT-16BBBBB00650.21 BB00
0573lz1_I_DT-16_DA-15BB2BB07190.36 BB07
0583lz1_I_DA-15_DA-14BBBBB00780.24 BB00
0593lz1_I_DA-14_DA-13BBBBB00600.21 BB00
0603lz1_I_DA-13_DA-12miBBB15410.24 BB15
0613lz1_I_DA-12_DC-11BBwBB17430.27 BB17
0623lz1_I_DC-11_DG-10miBBB10770.35 BB10
0633lz1_I_DG-10_DC-9NANNANT00.39 BB10
0643lz1_I_DC-9_DG-8BBBBB00410.37 BB00
0653lz1_I_DG-8_DG-7miBBB10460.33 BB10
0663lz1_I_DG-7_DG-6NANNANT00.35 BB07
0673lz1_I_DG-6_DG-5NANNANT00.40 BB10
0683lz1_I_DG-5_DG-4NANNANT00.39 BB07
0693lz1_I_DG-4_DA-3BBBBB00560.47 BB00
0703lz1_I_DA-3_DC-2BBwBB17470.43 BB17
0713lz1_I_DC-2_DA-1NANNANT00.59 BB10
0723lz1_I_DA-1_DG0BBBBB00240.34 BB00
0733lz1_I_DG0_DC1BBBBB01570.27 BB01
0743lz1_I_DC1_DG2miBBB10360.25 BB10
0753lz1_I_DG2_DC3B12BB04410.20 BB04
0763lz1_I_DC3_DG4miBBB10800.23 BB10
0773lz1_I_DG4_DT5BBBBB0090.44 BB00
0783lz1_I_DT5_DA6BB2BB07300.30 BB07
0793lz1_I_DA6_DC7BBwBB11360.30 BB11
0803lz1_I_DC7_DG8BBBBB00550.38 BB00
0813lz1_I_DG8_DT9B-ABA05580.32 BA05
0823lz1_I_DT9_DG10BBBBB01540.35 BB01
0833lz1_I_DG10_DC11NANNANT00.50 BA08
0843lz1_I_DC11_DG12A-BAB05310.40 AB05
0853lz1_I_DG12_DT13BBwBB17710.29 BB17
0863lz1_I_DT13_DT14NANNANT00.51 BB17
0873lz1_I_DT14_DT15BBBBB01260.28 BB01
0883lz1_I_DT15_DA16B12BB04270.46 BB04
0893lz1_I_DA16_DA17BB2BB07260.36 BB07
0903lz1_I_DA17_DG18B-ABA05420.32 BA05
0913lz1_I_DG18_DC19BBBBB00190.27 BB00
0923lz1_I_DC19_DG20miBBB10820.18 BB10
0933lz1_I_DG20_DG21BBwBB17360.28 BB17
0943lz1_I_DG21_DT22BBBBB01180.40 BB01
0953lz1_I_DT22_DG23miBBB10630.19 BB10
0963lz1_I_DG23_DC24BBwBB17720.34 BB17
0973lz1_I_DC24_DT25B-ABA17620.19 BA17
0983lz1_I_DT25_DA26NANNANT00.54 BA17
0993lz1_I_DA26_DG27BBBBB00710.25 BB00
1003lz1_I_DG27_DA28BB2BB07110.30 BB07
1013lz1_I_DA28_DG29B12BB04530.29 BB04
1023lz1_I_DG29_DC30miBBB10660.26 BB10
1033lz1_I_DC30_DT31miBBB14610.36 BB14
1043lz1_I_DT31_DG32miBBB10480.25 BB10
1053lz1_I_DG32_DT33BBBBB00320.50 BB00
1063lz1_I_DT33_DC34BBBBB01140.24 BB01
1073lz1_I_DC34_DT35miBBB10930.32 BB10
1083lz1_I_DT35_DA36BB2BB07370.21 BB07
1093lz1_I_DA36_DC37miBBB10170.44 BB10
1103lz1_I_DC37_DG38B12BB04780.20 BB04
1113lz1_I_DG38_DA39BBBBB00520.58 BB00
1123lz1_I_DA39_DC40BBBBB00440.29 BB00
1133lz1_I_DC40_DC41BBBBB00660.23 BB00
1143lz1_I_DC41_DA42BBBBB00220.57 BB00
1153lz1_I_DA42_DA43NANNANT00.29 BB14
1163lz1_I_DA43_DT44miBBB14850.32 BB14
1173lz1_I_DT44_DT45NANNANT00.41 BB17
1183lz1_I_DT45_DG46NANNANT00.42 BB07
1193lz1_I_DG46_DA47NANNANT00.43 BB07
1203lz1_I_DA47_DG48BBBBB00530.31 BB00
1213lz1_I_DG48_DC49B-ABA08850.28 BA08
1223lz1_I_DC49_DG50A-BAB01440.20 AB01
1233lz1_I_DG50_DG51miBBB10730.19 BB10
1243lz1_I_DG51_DC52BBBBB00760.25 BB00
1253lz1_I_DC52_DC53BBBBB00530.24 BB00
1263lz1_I_DC53_DT54BBBBB00520.36 BB00
1273lz1_I_DT54_DC55BBwBB17540.47 BB17
1283lz1_I_DC55_DG56NANNANT00.42 BB07
1293lz1_I_DG56_DG57B12BB04130.43 BB04
1303lz1_I_DG57_DC58BBBBB00800.24 BB00
1313lz1_I_DC58_DA59BB2BB07670.19 BB07
1323lz1_I_DA59_DC60BBBBB00830.21 BB00
1333lz1_I_DC60_DC61BBBBB00240.40 BB00
1343lz1_I_DC61_DG62BBBBB00550.30 BB00
1353lz1_I_DG62_DG63B-ABA08660.32 BA08
1363lz1_I_DG63_DG64BBBBB00100.25 BB00
1373lz1_I_DG64_DA65miBBB10480.42 BB10
1383lz1_I_DA65_DT66BBwBB17650.37 BB17
1393lz1_I_DT66_DT67NANNANT00.66 BB10
1403lz1_I_DT67_DC68miBBB14680.39 BB14
1413lz1_I_DC68_DT69BB2BB07140.43 BB07
1423lz1_I_DT69_DG70BBBBB00440.28 BB00
1433lz1_I_DG70_DA71miBBB10690.37 BB10
1443lz1_I_DA71_DT72BBBBB00450.31 BB00
1453lz1_J_DA-72_DT-71NANNANT00.78 AA06
1463lz1_J_DT-71_DC-70BBwBB16380.69 BB16
1473lz1_J_DC-70_DA-69BBBBB00480.36 BB00
1483lz1_J_DA-69_DG-68BBBBB00540.42 BB00
1493lz1_J_DG-68_DA-67NANNANT00.49 BB07
1503lz1_J_DA-67_DA-66NANNANT00.39 BB00
1513lz1_J_DA-66_DT-65BBBBB00770.25 BB00
1523lz1_J_DT-65_DC-64B12BB04200.38 BB04
1533lz1_J_DC-64_DC-63B-ABA05350.32 BA05
1543lz1_J_DC-63_DC-62NANNANT00.45 BB10
1553lz1_J_DC-62_DG-61A-BAB01120.41 AB01
1563lz1_J_DG-61_DG-60BBBBB00720.22 BB00
1573lz1_J_DG-60_DT-59miBBB10380.34 BB10
1583lz1_J_DT-59_DG-58B-ABA08290.32 BA08
1593lz1_J_DG-58_DC-57miBBB14620.25 BB14
1603lz1_J_DC-57_DC-56miBBB10500.30 BB10
1613lz1_J_DC-56_DG-55BB2BB07610.30 BB07
1623lz1_J_DG-55_DA-54NANNANT00.46 BB00
1633lz1_J_DA-54_DG-53BB2BB0760.59 BB07
1643lz1_J_DG-53_DG-52miBBB10440.40 BB10
1653lz1_J_DG-52_DC-51miBBB10750.24 BB10
1663lz1_J_DC-51_DC-50BBwBB17650.22 BB17
1673lz1_J_DC-50_DG-49miBBB10540.41 BB10
1683lz1_J_DG-49_DC-48B12BB04320.28 BB04
1693lz1_J_DC-48_DT-47BBBBB00250.38 BB00
1703lz1_J_DT-47_DC-46NANNANT00.53 BB10
1713lz1_J_DC-46_DA-45B12BB04320.31 BB04
1723lz1_J_DA-45_DA-44B12BB04380.21 BB04
1733lz1_J_DA-44_DT-43BBBBB00600.24 BB00
1743lz1_J_DT-43_DT-42BBBBB01740.22 BB01
1753lz1_J_DT-42_DG-41NANNANT00.35 BB10
1763lz1_J_DG-41_DG-40BBwBB17870.34 BB17
1773lz1_J_DG-40_DT-39NANNANT00.53 BB00
1783lz1_J_DT-39_DC-38miBBB10480.27 BB10
1793lz1_J_DC-38_DG-37miBBB14860.22 BB14
1803lz1_J_DG-37_DT-36BB2BB07650.33 BB07
1813lz1_J_DT-36_DA-35NANNANT00.29 BB07
1823lz1_J_DA-35_DG-34NANNANT00.44 BB15
1833lz1_J_DG-34_DA-33miBBB10520.29 BB10
1843lz1_J_DA-33_DC-32miBBB14780.24 BB14
1853lz1_J_DC-32_DA-31miBBB10860.30 BB10
1863lz1_J_DA-31_DG-30miBBB10630.17 BB10
1873lz1_J_DG-30_DC-29BBBBB01260.33 BB01
1883lz1_J_DC-29_DT-28BBwBB17570.31 BB17
1893lz1_J_DT-28_DC-27NANNANT00.48 BB04
1903lz1_J_DC-27_DT-26NANNANT00.47 BA17
1913lz1_J_DT-26_DA-25B12BB04640.31 BB04
1923lz1_J_DA-25_DG-24miBBB10810.27 BB10
1933lz1_J_DG-24_DC-23miBBB10490.37 BB10
1943lz1_J_DC-23_DA-22NANNANT00.38 BB02
1953lz1_J_DA-22_DC-21B-ABA08550.40 BA08
1963lz1_J_DC-21_DC-20miBBB14670.27 BB14
1973lz1_J_DC-20_DG-19miBBB10300.53 BB10
1983lz1_J_DG-19_DC-18NANNANT00.74 BB10
1993lz1_J_DC-18_DT-17NANNANT00.53 BB10
2003lz1_J_DT-17_DT-16NANNANT00.43 AB02
2013lz1_J_DT-16_DA-15B12BB04200.45 BB04
2023lz1_J_DA-15_DA-14miBBB10830.26 BB10
2033lz1_J_DA-14_DA-13BBBBB00510.29 BB00
2043lz1_J_DA-13_DC-12BBBBB01820.28 BB01
2053lz1_J_DC-12_DG-11B-ABA08370.48 BA08
2063lz1_J_DG-11_DC-10BBBBB01460.27 BB01
2073lz1_J_DC-10_DA-9BBwBB17840.25 BB17
2083lz1_J_DA-9_DC-8miBBB10710.21 BB10
2093lz1_J_DC-8_DG-7B12BB04370.28 BB04
2103lz1_J_DG-7_DT-6BB2BB07470.32 BB07
2113lz1_J_DT-6_DA-5BB2BB07340.41 BB07
2123lz1_J_DA-5_DC-4NANNANT00.26 BA17
2133lz1_J_DC-4_DG-3A-BAB03690.24 AB03
2143lz1_J_DG-3_DC-2BBBBB00590.28 BB00
2153lz1_J_DC-2_DG-1miBBB10770.28 BB10
2163lz1_J_DG-1_DC0NANNANT00.38 BB02
2173lz1_J_DC0_DT1BBBBB00850.21 BB00
2183lz1_J_DT1_DG2miBBB10680.23 BB10
2193lz1_J_DG2_DT3BBBBB00240.36 BB00
2203lz1_J_DT3_DC4miBBB10750.23 BB10
2213lz1_J_DC4_DC5NANNANT00.48 BB10
2223lz1_J_DC5_DC6NANNANT00.55 BB10
2233lz1_J_DC6_DC7BB2BB07230.37 BB07
2243lz1_J_DC7_DC8B12BB04820.16 BB04
2253lz1_J_DC8_DG9BBBBB00510.29 BB00
2263lz1_J_DG9_DC10BBBBB01110.36 BB01
2273lz1_J_DC10_DG11BBwBB17630.36 BB17
2283lz1_J_DG11_DT12miBBB10610.39 BB10
2293lz1_J_DT12_DT13BBBBB00870.22 BB00
2303lz1_J_DT13_DT14BBBBB00680.27 BB00
2313lz1_J_DT14_DT15miBBB10490.41 BB10
2323lz1_J_DT15_DA16BBBBB00620.29 BB00
2333lz1_J_DA16_DA17BB2BB07410.31 BB07
2343lz1_J_DA17_DC18BBBBB01870.20 BB01
2353lz1_J_DC18_DC19miBBB15580.25 BB15
2363lz1_J_DC19_DG20BBBBB00570.37 BB00
2373lz1_J_DG20_DC21NANNANT00.36 BA08
2383lz1_J_DC21_DC22A-BAB01300.31 AB01
2393lz1_J_DC22_DA23miBBB10830.20 BB10
2403lz1_J_DA23_DA24BBwBB17550.34 BB17
2413lz1_J_DA24_DG25miBBB10630.39 BB10
2423lz1_J_DG25_DG26BB2BB07710.35 BB07
2433lz1_J_DG26_DG27B12BB04220.41 BB04
2443lz1_J_DG27_DG28B12BB04380.29 BB04
2453lz1_J_DG28_DA29BBBBB00770.26 BB00
2463lz1_J_DA29_DT30miBBB10920.32 BB10
2473lz1_J_DT30_DT31BBBBB00790.29 BB00
2483lz1_J_DT31_DA32miBBB10650.22 BB10
2493lz1_J_DA32_DC33B12BB04360.28 BB04
2503lz1_J_DC33_DT34NANNANT00.51 BB10
2513lz1_J_DT34_DC35NANNANT00.39 BB14
2523lz1_J_DC35_DC36NANNANT00.46 BB07
2533lz1_J_DC36_DC37A-BAB0380.35 AB03
2543lz1_J_DC37_DT38BBBBB00130.32 BB00
2553lz1_J_DT38_DA39BBBBB00390.38 BB00
2563lz1_J_DA39_DG40NANNANT00.44 BB10
2573lz1_J_DG40_DT41BBBBB00550.33 BB00
2583lz1_J_DT41_DC42BBBBB01620.18 BB01
2593lz1_J_DC42_DT43BBwBB17640.26 BB17
2603lz1_J_DT43_DC44NANNANT00.32 BB14
2613lz1_J_DC44_DC45BBwBB17410.41 BB17
2623lz1_J_DC45_DA46B12BB04170.36 BB04
2633lz1_J_DA46_DG47NANNANT00.45 BB07
2643lz1_J_DG47_DG48BBBBB00420.22 BB00
2653lz1_J_DG48_DC49BBBBB00490.34 BB00
2663lz1_J_DC49_DA50NANNANT00.38 BB00
2673lz1_J_DA50_DC51NANNANT00.47 BB10
2683lz1_J_DC51_DG52NANNANT00.25 BA08
2693lz1_J_DG52_DT53A-BAB01560.27 AB01
2703lz1_J_DT53_DG54miBBB10300.44 BB10
2713lz1_J_DG54_DT55miBBB14390.28 BB14
2723lz1_J_DT55_DC56B12BB04420.33 BB04
2733lz1_J_DC56_DA57BB2BB07810.28 BB07
2743lz1_J_DA57_DG58BBBBB00660.31 BB00
2753lz1_J_DG58_DA59B12BB04480.44 BB04
2763lz1_J_DA59_DT60BBwBB17390.32 BB17
2773lz1_J_DT60_DA61BBBBB01510.29 BB01
2783lz1_J_DA61_DT62NANNANT00.60 BB07
2793lz1_J_DT62_DA63miBBB10620.35 BB10
2803lz1_J_DA63_DT64miBBB14270.25 BB14
2813lz1_J_DT64_DA65miBBB14910.25 BB14
2823lz1_J_DA65_DC66BBBBB0090.33 BB00
2833lz1_J_DC66_DA67NANNANT00.50 BB07
2843lz1_J_DA67_DT68NANNANT00.25 BB05
2853lz1_J_DT68_DC69NANNANT00.44 BB10
2863lz1_J_DC69_DG70BBBBB00530.27 BB00
2873lz1_J_DG70_DA71miBBB10860.30 BB10
2883lz1_J_DA71_DT72miBBB10650.39 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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