Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3ktq_B_DG101_DA102 | BBB | BB00 | 49 | 0.32 |
| 02 | 3ktq_B_DA102_DC103 | BBB | BB00 | 87 | 0.15 |
| 03 | 3ktq_B_DC103_DC104 | BBB | BB00 | 56 | 0.38 |
| 04 | 3ktq_B_DC104_DA105 | BBB | BB00 | 66 | 0.36 |
| 05 | 3ktq_B_DA105_DC106 | BBB | BB00 | 68 | 0.23 |
| 06 | 3ktq_B_DC106_DG107 | BBB | BB00 | 67 | 0.25 |
| 07 | 3ktq_B_DG107_DG108 | BBB | BB01 | 71 | 0.24 |
| 08 | 3ktq_B_DG108_DC109 | BBB | BB00 | 80 | 0.19 |
| 09 | 3ktq_B_DC109_DG110 | B-A | BA08 | 84 | 0.29 |
| 10 | 3ktq_B_DG110_DC111 | AAA | AA00 | 84 | 0.18 |
| 11 | 3ktq_C_DA203_DG204 | NAN | NANT | 0 | 1.58 |
| 12 | 3ktq_C_DG204_DG205 | AAA | AA00 | 59 | 0.22 |
| 13 | 3ktq_C_DG205_DG206 | AAA | AA00 | 56 | 0.27 |
| 14 | 3ktq_C_DG206_DC207 | AAw | AA01 | 91 | 0.16 |
| 15 | 3ktq_C_DC207_DG208 | A-B | AB05 | 85 | 0.24 |
| 16 | 3ktq_C_DG208_DC209 | BBB | BB00 | 87 | 0.22 |
| 17 | 3ktq_C_DC209_DC210 | BBB | BB00 | 81 | 0.24 |
| 18 | 3ktq_C_DC210_DG211 | NAN | NANT | 0 | 0.26 |
| 19 | 3ktq_C_DG211_DT212 | BBB | BB00 | 66 | 0.22 |
| 20 | 3ktq_C_DT212_DG213 | NAN | NANT | 0 | 0.46 |
| 21 | 3ktq_C_DG213_DG214 | BBB | BB00 | 21 | 0.37 |
| 22 | 3ktq_C_DG214_DT215 | NAN | NANT | 0 | 0.59 |
| 23 | 3ktq_C_DT215_DC216 | NAN | NANT | 0 | 0.61 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|