Conformers:
ABBIImiBZICOPNSYNN
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Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation Mechanism
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 001 | 3kqu_M_DT.A1_DT.A2 | NAN | NANT | 0 | 1.12 |
| 002 | 3kqu_M_DT.B1_DT.B2 | NAN | NANT | 0 | 1.21 |
| 003 | 3kqu_M_DT.C1_DT.C2 | NAN | NANT | 0 | 1.26 |
| 004 | 3kqu_M_DT.D1_DT.D2 | NAN | NANT | 0 | 1.21 |
| 005 | 3kqu_M_DT.A2_DT.A3 | NAN | NANT | 0 | 0.56 |
| 006 | 3kqu_M_DT.B2_DT.B3 | NAN | NANT | 0 | 0.51 |
| 007 | 3kqu_M_DT.C2_DT.C3 | NAN | NANT | 0 | 0.68 |
| 008 | 3kqu_M_DT.D2_DT.D3 | NAN | NANT | 0 | 0.55 |
| 009 | 3kqu_M_DT.A3_DT.A4 | NAN | NANT | 0 | 1.09 |
| 010 | 3kqu_M_DT.B3_DT.B4 | NAN | NANT | 0 | 1.09 |
| 011 | 3kqu_M_DT.C3_DT.C4 | NAN | NANT | 0 | 1.09 |
| 012 | 3kqu_M_DT.D3_DT.D4 | NAN | NANT | 0 | 1.09 |
| 013 | 3kqu_M_DT.A4_DT.A5 | NAN | NANT | 0 | 1.62 |
| 014 | 3kqu_M_DT.B4_DT.B5 | NAN | NANT | 0 | 1.62 |
| 015 | 3kqu_M_DT.C4_DT.C5 | NAN | NANT | 0 | 1.62 |
| 016 | 3kqu_M_DT.D4_DT.D5 | NAN | NANT | 0 | 1.62 |
| 017 | 3kqu_M_DT.A5_DT.A6 | B-A | BA05 | 62 | 0.25 |
| 018 | 3kqu_M_DT.B5_DT.B6 | B-A | BA05 | 62 | 0.25 |
| 019 | 3kqu_M_DT.C5_DT.C6 | B-A | BA05 | 62 | 0.25 |
| 020 | 3kqu_M_DT.D5_DT.D6 | B-A | BA05 | 62 | 0.25 |
| 021 | 3kqu_M_DT.A6_DT.A7 | NAN | NANT | 0 | 0.78 |
| 022 | 3kqu_M_DT.B6_DT.B7 | NAN | NANT | 0 | 0.78 |
| 023 | 3kqu_M_DT.C6_DT.C7 | NAN | NANT | 0 | 0.78 |
| 024 | 3kqu_M_DT.D6_DT.D7 | NAN | NANT | 0 | 0.78 |
| 025 | 3kqu_M_DT.A7_DT.A8 | NAN | NANT | 0 | 0.83 |
| 026 | 3kqu_M_DT.B7_DT.B8 | NAN | NANT | 0 | 0.83 |
| 027 | 3kqu_M_DT.C7_DT.C8 | NAN | NANT | 0 | 0.83 |
| 028 | 3kqu_M_DT.D7_DT.D8 | NAN | NANT | 0 | 0.83 |
| 029 | 3kqu_M_DT.A8_DT.A9 | NAN | NANT | 0 | 0.84 |
| 030 | 3kqu_M_DT.B8_DT.B9 | NAN | NANT | 0 | 0.84 |
| 031 | 3kqu_M_DT.C8_DT.C9 | NAN | NANT | 0 | 0.84 |
| 032 | 3kqu_M_DT.D8_DT.D9 | NAN | NANT | 0 | 0.84 |
| 033 | 3kqu_M_DT.A9_DT.A10 | NAN | NANT | 0 | 1.09 |
| 034 | 3kqu_M_DT.B9_DT.B10 | NAN | NANT | 0 | 1.09 |
| 035 | 3kqu_M_DT.C9_DT.C10 | NAN | NANT | 0 | 1.09 |
| 036 | 3kqu_M_DT.D9_DT.D10 | NAN | NANT | 0 | 1.09 |
| 037 | 3kqu_M_DT.A10_DT.A11 | NAN | NANT | 0 | 1.62 |
| 038 | 3kqu_M_DT.B10_DT.B11 | NAN | NANT | 0 | 1.62 |
| 039 | 3kqu_M_DT.C10_DT.C11 | NAN | NANT | 0 | 1.62 |
| 040 | 3kqu_M_DT.D10_DT.D11 | NAN | NANT | 0 | 1.62 |
| 041 | 3kqu_M_DT.A11_DT.A12 | B-A | BA05 | 62 | 0.26 |
| 042 | 3kqu_M_DT.B11_DT.B12 | B-A | BA05 | 62 | 0.26 |
| 043 | 3kqu_M_DT.C11_DT.C12 | B-A | BA05 | 62 | 0.26 |
| 044 | 3kqu_M_DT.D11_DT.D12 | B-A | BA05 | 62 | 0.26 |
| 045 | 3kqu_M_DT.A12_DT.A13 | NAN | NANT | 0 | 0.80 |
| 046 | 3kqu_M_DT.B12_DT.B13 | NAN | NANT | 0 | 0.80 |
| 047 | 3kqu_M_DT.C12_DT.C13 | NAN | NANT | 0 | 0.80 |
| 048 | 3kqu_M_DT.D12_DT.D13 | NAN | NANT | 0 | 0.80 |
| 049 | 3kqu_M_DT.A13_DT.A14 | NAN | NANT | 0 | 0.73 |
| 050 | 3kqu_M_DT.B13_DT.B14 | NAN | NANT | 0 | 0.73 |
| 051 | 3kqu_M_DT.C13_DT.C14 | NAN | NANT | 0 | 0.73 |
| 052 | 3kqu_M_DT.D13_DT.D14 | NAN | NANT | 0 | 0.73 |
| 053 | 3kqu_M_DT.A14_DT.A15 | NAN | NANT | 0 | 0.84 |
| 054 | 3kqu_M_DT.B14_DT.B15 | NAN | NANT | 0 | 0.84 |
| 055 | 3kqu_M_DT.C14_DT.C15 | NAN | NANT | 0 | 0.84 |
| 056 | 3kqu_M_DT.D14_DT.D15 | NAN | NANT | 0 | 0.84 |
| 057 | 3kqu_M_DT.A15_DT.A16 | NAN | NANT | 0 | 1.09 |
| 058 | 3kqu_M_DT.B15_DT.B16 | NAN | NANT | 0 | 1.09 |
| 059 | 3kqu_M_DT.C15_DT.C16 | NAN | NANT | 0 | 1.09 |
| 060 | 3kqu_M_DT.D15_DT.D16 | NAN | NANT | 0 | 1.09 |
| 061 | 3kqu_M_DT.A16_DT.A17 | NAN | NANT | 0 | 1.60 |
| 062 | 3kqu_M_DT.B16_DT.B17 | NAN | NANT | 0 | 1.63 |
| 063 | 3kqu_M_DT.C16_DT.C17 | NAN | NANT | 0 | 1.63 |
| 064 | 3kqu_M_DT.D16_DT.D17 | NAN | NANT | 0 | 1.66 |
| 065 | 3kqu_M_DT.A17_DT.A18 | NAN | NANT | 0 | 0.45 |
| 066 | 3kqu_M_DT.B17_DT.B18 | B-A | BA05 | 38 | 0.25 |
| 067 | 3kqu_M_DT.C17_DT.C18 | NAN | NANT | 0 | 0.38 |
| 068 | 3kqu_M_DT.D17_DT.D18 | BBB | BB00 | 21 | 0.55 |
| 069 | 3kqu_N_DT.A21_DT.A22 | NAN | NANT | 0 | 1.12 |
| 070 | 3kqu_N_DT.B21_DT.B22 | NAN | NANT | 0 | 1.14 |
| 071 | 3kqu_N_DT.C21_DT.C22 | NAN | NANT | 0 | 1.26 |
| 072 | 3kqu_N_DT.D21_DT.D22 | NAN | NANT | 0 | 1.12 |
| 073 | 3kqu_N_DT.A22_DT.A23 | NAN | NANT | 0 | 0.55 |
| 074 | 3kqu_N_DT.B22_DT.B23 | NAN | NANT | 0 | 0.58 |
| 075 | 3kqu_N_DT.C22_DT.C23 | NAN | NANT | 0 | 0.70 |
| 076 | 3kqu_N_DT.D22_DT.D23 | NAN | NANT | 0 | 0.55 |
| 077 | 3kqu_N_DT.A23_DT.A24 | NAN | NANT | 0 | 1.09 |
| 078 | 3kqu_N_DT.B23_DT.B24 | NAN | NANT | 0 | 1.09 |
| 079 | 3kqu_N_DT.C23_DT.C24 | NAN | NANT | 0 | 1.09 |
| 080 | 3kqu_N_DT.D23_DT.D24 | NAN | NANT | 0 | 1.09 |
| 081 | 3kqu_N_DT.A24_DT.A25 | NAN | NANT | 0 | 1.62 |
| 082 | 3kqu_N_DT.B24_DT.B25 | NAN | NANT | 0 | 1.62 |
| 083 | 3kqu_N_DT.C24_DT.C25 | NAN | NANT | 0 | 1.62 |
| 084 | 3kqu_N_DT.D24_DT.D25 | NAN | NANT | 0 | 1.62 |
| 085 | 3kqu_N_DT.A25_DT.A26 | B-A | BA05 | 63 | 0.25 |
| 086 | 3kqu_N_DT.B25_DT.B26 | B-A | BA05 | 63 | 0.25 |
| 087 | 3kqu_N_DT.C25_DT.C26 | B-A | BA05 | 63 | 0.25 |
| 088 | 3kqu_N_DT.D25_DT.D26 | B-A | BA05 | 63 | 0.25 |
| 089 | 3kqu_N_DT.A26_DT.A27 | NAN | NANT | 0 | 0.79 |
| 090 | 3kqu_N_DT.B26_DT.B27 | NAN | NANT | 0 | 0.79 |
| 091 | 3kqu_N_DT.C26_DT.C27 | NAN | NANT | 0 | 0.79 |
| 092 | 3kqu_N_DT.D26_DT.D27 | NAN | NANT | 0 | 0.79 |
| 093 | 3kqu_N_DT.A27_DT.A28 | NAN | NANT | 0 | 0.83 |
| 094 | 3kqu_N_DT.B27_DT.B28 | NAN | NANT | 0 | 0.83 |
| 095 | 3kqu_N_DT.C27_DT.C28 | NAN | NANT | 0 | 0.83 |
| 096 | 3kqu_N_DT.D27_DT.D28 | NAN | NANT | 0 | 0.83 |
| 097 | 3kqu_N_DT.A28_DT.A29 | NAN | NANT | 0 | 0.85 |
| 098 | 3kqu_N_DT.B28_DT.B29 | NAN | NANT | 0 | 0.85 |
| 099 | 3kqu_N_DT.C28_DT.C29 | NAN | NANT | 0 | 0.85 |
| 100 | 3kqu_N_DT.D28_DT.D29 | NAN | NANT | 0 | 0.84 |
| 101 | 3kqu_N_DT.A29_DT.A30 | NAN | NANT | 0 | 1.09 |
| 102 | 3kqu_N_DT.B29_DT.B30 | NAN | NANT | 0 | 1.09 |
| 103 | 3kqu_N_DT.C29_DT.C30 | NAN | NANT | 0 | 1.09 |
| 104 | 3kqu_N_DT.D29_DT.D30 | NAN | NANT | 0 | 1.09 |
| 105 | 3kqu_N_DT.A30_DT.A31 | NAN | NANT | 0 | 1.62 |
| 106 | 3kqu_N_DT.B30_DT.B31 | NAN | NANT | 0 | 1.62 |
| 107 | 3kqu_N_DT.C30_DT.C31 | NAN | NANT | 0 | 1.62 |
| 108 | 3kqu_N_DT.D30_DT.D31 | NAN | NANT | 0 | 1.62 |
| 109 | 3kqu_N_DT.A31_DT.A32 | NAN | NANT | 0 | 0.23 |
| 110 | 3kqu_N_DT.B31_DT.B32 | NAN | NANT | 0 | 0.23 |
| 111 | 3kqu_N_DT.C31_DT.C32 | NAN | NANT | 0 | 0.23 |
| 112 | 3kqu_N_DT.D31_DT.D32 | NAN | NANT | 0 | 0.23 |
| 113 | 3kqu_N_DT.A32_DT.A33 | NAN | NANT | 0 | 0.79 |
| 114 | 3kqu_N_DT.B32_DT.B33 | NAN | NANT | 0 | 0.79 |
| 115 | 3kqu_N_DT.C32_DT.C33 | NAN | NANT | 0 | 0.79 |
| 116 | 3kqu_N_DT.D32_DT.D33 | NAN | NANT | 0 | 0.79 |
| 117 | 3kqu_N_DT.A33_DT.A34 | NAN | NANT | 0 | 0.73 |
| 118 | 3kqu_N_DT.B33_DT.B34 | NAN | NANT | 0 | 0.73 |
| 119 | 3kqu_N_DT.C33_DT.C34 | NAN | NANT | 0 | 0.73 |
| 120 | 3kqu_N_DT.D33_DT.D34 | NAN | NANT | 0 | 0.73 |
| 121 | 3kqu_N_DT.A34_DT.A35 | NAN | NANT | 0 | 0.84 |
| 122 | 3kqu_N_DT.B34_DT.B35 | NAN | NANT | 0 | 0.84 |
| 123 | 3kqu_N_DT.C34_DT.C35 | NAN | NANT | 0 | 0.84 |
| 124 | 3kqu_N_DT.D34_DT.D35 | NAN | NANT | 0 | 0.84 |
| 125 | 3kqu_N_DT.A35_DT.A36 | NAN | NANT | 0 | 1.09 |
| 126 | 3kqu_N_DT.B35_DT.B36 | NAN | NANT | 0 | 1.09 |
| 127 | 3kqu_N_DT.C35_DT.C36 | NAN | NANT | 0 | 1.09 |
| 128 | 3kqu_N_DT.D35_DT.D36 | NAN | NANT | 0 | 1.09 |
| 129 | 3kqu_N_DT.A36_DT.A37 | NAN | NANT | 0 | 1.60 |
| 130 | 3kqu_N_DT.B36_DT.B37 | NAN | NANT | 0 | 1.59 |
| 131 | 3kqu_N_DT.C36_DT.C37 | NAN | NANT | 0 | 1.56 |
| 132 | 3kqu_N_DT.D36_DT.D37 | NAN | NANT | 0 | 1.63 |
| 133 | 3kqu_N_DT.A37_DT.A38 | NAN | NANT | 0 | 0.45 |
| 134 | 3kqu_N_DT.B37_DT.B38 | NAN | NANT | 0 | 0.47 |
| 135 | 3kqu_N_DT.C37_DT.C38 | NAN | NANT | 0 | 0.54 |
| 136 | 3kqu_N_DT.D37_DT.D38 | NAN | NANT | 0 | 0.55 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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