DNATCO v4.1: results

Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA

Results of the assignment of 160 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3klf_C_DG703_DC704	NAN	NANT	0	1.08	IC02
002	3klf_C_DC704_DA705	NAN	NANT	0	0.56	OP10
003	3klf_C_DA705_DT706	AAA	AA00	11	0.35	AA00
004	3klf_C_DT706_DG707	AAA	AA00	29	0.23	AA00
005	3klf_C_DG707_DG708	AAA	AA00	22	0.28	AA00
006	3klf_C_DG708_DC709	AAA	AA00	24	0.17	AA00
007	3klf_C_DC709_DG710	NAN	NANT	0	0.22	AA04
008	3klf_C_DG710_DC711	NAN	NANT	0	0.68	BB16
009	3klf_C_DC711_DC712	BBB	BB00	83	0.27	BB00
010	3klf_C_DC712_DC713	BBB	BB00	80	0.22	BB00
011	3klf_C_DC713_DG714	BBB	BB00	88	0.17	BB00
012	3klf_C_DG714_DA715	B12	BB04	93	0.13	BB04
013	3klf_C_DA715_DA716	BBB	BB00	91	0.15	BB00
014	3klf_C_DA716_DC717	BBB	BB00	20	0.26	BB00
015	3klf_C_DC717_DA718	BBB	BB00	75	0.24	BB00
016	3klf_C_DA718_DG719	BBB	BB00	64	0.20	BB00
017	3klf_C_DG719_DG720	B12	BB04	59	0.20	BB04
018	3klf_C_DG720_DG721	BBB	BB00	72	0.28	BB00
019	3klf_C_DG721_DA722	BBB	BB00	68	0.25	BB00
020	3klf_C_DA722_DC723	miB	BB15	70	0.22	BB15
021	3klf_C_DC723_DT724	BBB	BB00	42	0.31	BB00
022	3klf_C_DT724_DG725	BBB	BB00	34	0.30	BB00
023	3klf_D_DC803_DA804	BBB	BB00	73	0.26	BB00
024	3klf_D_DA804_DG805	BBB	BB00	65	0.22	BB00
025	3klf_D_DG805_DT806	BBw	BB02	44	0.32	BB02
026	3klf_D_DT806_DC807	BBw	BB02	68	0.27	BB02
027	3klf_D_DC807_DC808	BBw	BB02	23	0.38	BB02
028	3klf_D_DC808_DC809	BBB	BB00	53	0.24	BB00
029	3klf_D_DC809_DT810	BBw	BB02	63	0.23	BB02
030	3klf_D_DT810_DG811	BBB	BB00	65	0.36	BB00
031	3klf_D_DG811_DT812	BBB	BB00	74	0.24	BB00
032	3klf_D_DT812_DT813	BBB	BB00	76	0.24	BB00
033	3klf_D_DT813_DC814	BBB	BB00	64	0.17	BB00
034	3klf_D_DC814_DG815	B12	BB04	72	0.24	BB04
035	3klf_D_DG815_DG816	BBB	BB00	78	0.24	BB00
036	3klf_D_DG816_MRG817	BBB	BB00	55	0.41	BB00
037	3klf_D_MRG817_DC818	B-A	BA01	25	0.31	BA01
038	3klf_D_DC818_DG819	AAA	AA00	16	0.23	AA00
039	3klf_D_DG819_DC820	AAA	AA00	45	0.24	AA00
040	3klf_D_DC820_DC821	AAA	AA00	20	0.32	AA00
041	3klf_G_DG703_DC704	NAN	NANT	0	1.08	IC02
042	3klf_G_DC704_DA705	NAN	NANT	0	0.55	OP10
043	3klf_G_DA705_DT706	AAA	AA00	17	0.33	AA00
044	3klf_G_DT706_DG707	AAA	AA00	24	0.23	AA00
045	3klf_G_DG707_DG708	AAA	AA00	24	0.29	AA00
046	3klf_G_DG708_DC709	AAA	AA00	29	0.21	AA00
047	3klf_G_DC709_DG710	NAN	NANT	0	0.45	AB04
048	3klf_G_DG710_DC711	NAN	NANT	0	0.70	BB16
049	3klf_G_DC711_DC712	BBB	BB00	85	0.28	BB00
050	3klf_G_DC712_DC713	BBB	BB00	78	0.22	BB00
051	3klf_G_DC713_DG714	BBB	BB00	88	0.17	BB00
052	3klf_G_DG714_DA715	B12	BB04	94	0.13	BB04
053	3klf_G_DA715_DA716	BBB	BB00	94	0.14	BB00
054	3klf_G_DA716_DC717	BBB	BB00	27	0.27	BB00
055	3klf_G_DC717_DA718	BBB	BB00	72	0.25	BB00
056	3klf_G_DA718_DG719	BBB	BB00	61	0.20	BB00
057	3klf_G_DG719_DG720	B12	BB04	51	0.20	BB04
058	3klf_G_DG720_DG721	BBB	BB00	71	0.27	BB00
059	3klf_G_DG721_DA722	BBB	BB00	65	0.25	BB00
060	3klf_G_DA722_DC723	miB	BB15	64	0.25	BB15
061	3klf_G_DC723_DT724	BBB	BB00	43	0.31	BB00
062	3klf_G_DT724_DG725	BBB	BB00	32	0.30	BB00
063	3klf_H_DC803_DA804	BBB	BB00	71	0.28	BB00
064	3klf_H_DA804_DG805	BBB	BB00	68	0.23	BB00
065	3klf_H_DG805_DT806	BBw	BB02	62	0.26	BB02
066	3klf_H_DT806_DC807	BBw	BB02	66	0.25	BB02
067	3klf_H_DC807_DC808	BBw	BB02	56	0.35	BB02
068	3klf_H_DC808_DC809	BBB	BB00	51	0.26	BB00
069	3klf_H_DC809_DT810	BBw	BB02	52	0.22	BB02
070	3klf_H_DT810_DG811	BBB	BB00	69	0.31	BB00
071	3klf_H_DG811_DT812	BBB	BB00	83	0.19	BB00
072	3klf_H_DT812_DT813	BBB	BB00	91	0.19	BB00
073	3klf_H_DT813_DC814	BBB	BB00	82	0.15	BB00
074	3klf_H_DC814_DG815	B12	BB04	82	0.14	BB04
075	3klf_H_DG815_DG816	BBB	BB00	82	0.21	BB00
076	3klf_H_DG816_MRG817	BBB	BB00	86	0.32	BB00
077	3klf_H_MRG817_DC818	NAN	NANT	0	0.46	BA05
078	3klf_H_DC818_DG819	AAA	AA00	31	0.22	AA00
079	3klf_H_DG819_DC820	AAA	AA00	15	0.24	AA00
080	3klf_H_DC820_DC821	AAA	AA00	24	0.34	AA00
081	3klf_K_DG703_DC704	NAN	NANT	0	1.07	IC02
082	3klf_K_DC704_DA705	NAN	NANT	0	0.56	OP10
083	3klf_K_DA705_DT706	AAA	AA00	18	0.33	AA00
084	3klf_K_DT706_DG707	AAA	AA00	27	0.24	AA00
085	3klf_K_DG707_DG708	AAA	AA00	29	0.28	AA00
086	3klf_K_DG708_DC709	AAA	AA00	25	0.20	AA00
087	3klf_K_DC709_DG710	AAA	AA00	12	0.19	AA00
088	3klf_K_DG710_DC711	A-B	AB01	14	0.31	AB01
089	3klf_K_DC711_DC712	BBB	BB00	82	0.28	BB00
090	3klf_K_DC712_DC713	BBB	BB00	76	0.22	BB00
091	3klf_K_DC713_DG714	BBB	BB00	91	0.16	BB00
092	3klf_K_DG714_DA715	B12	BB04	94	0.14	BB04
093	3klf_K_DA715_DA716	BBB	BB00	93	0.14	BB00
094	3klf_K_DA716_DC717	BBB	BB00	25	0.27	BB00
095	3klf_K_DC717_DA718	BBB	BB00	69	0.25	BB00
096	3klf_K_DA718_DG719	BBB	BB00	65	0.20	BB00
097	3klf_K_DG719_DG720	B12	BB04	58	0.21	BB04
098	3klf_K_DG720_DG721	BBB	BB00	76	0.26	BB00
099	3klf_K_DG721_DA722	BBB	BB00	70	0.24	BB00
100	3klf_K_DA722_DC723	miB	BB15	64	0.24	BB15
101	3klf_K_DC723_DT724	BBB	BB00	47	0.30	BB00
102	3klf_K_DT724_DG725	BBB	BB00	23	0.29	BB00
103	3klf_L_DC803_DA804	BBB	BB00	64	0.34	BB00
104	3klf_L_DA804_DG805	BBB	BB00	62	0.28	BB00
105	3klf_L_DG805_DT806	BBw	BB02	58	0.27	BB02
106	3klf_L_DT806_DC807	BBw	BB02	68	0.25	BB02
107	3klf_L_DC807_DC808	BBw	BB02	48	0.36	BB02
108	3klf_L_DC808_DC809	BBB	BB00	35	0.27	BB00
109	3klf_L_DC809_DT810	BBw	BB02	22	0.31	BB02
110	3klf_L_DT810_DG811	BBB	BB00	65	0.28	BB00
111	3klf_L_DG811_DT812	BBB	BB00	84	0.21	BB00
112	3klf_L_DT812_DT813	BBB	BB00	91	0.17	BB00
113	3klf_L_DT813_DC814	BBB	BB00	90	0.12	BB00
114	3klf_L_DC814_DG815	B12	BB04	88	0.20	BB04
115	3klf_L_DG815_DG816	BBB	BB00	76	0.21	BB00
116	3klf_L_DG816_MRG817	BBB	BB00	72	0.34	BB00
117	3klf_L_MRG817_DC818	B-A	BA01	42	0.29	BA01
118	3klf_L_DC818_DG819	AAA	AA00	21	0.27	AA00
119	3klf_L_DG819_DC820	AAA	AA00	39	0.23	AA00
120	3klf_L_DC820_DC821	AAA	AA00	36	0.27	AA00
121	3klf_O_DG703_DC704	NAN	NANT	0	1.07	IC02
122	3klf_O_DC704_DA705	NAN	NANT	0	0.56	OP10
123	3klf_O_DA705_DT706	AAA	AA00	19	0.34	AA00
124	3klf_O_DT706_DG707	AAA	AA00	34	0.24	AA00
125	3klf_O_DG707_DG708	AAA	AA00	32	0.28	AA00
126	3klf_O_DG708_DC709	AAA	AA00	31	0.20	AA00
127	3klf_O_DC709_DG710	AAA	AA00	17	0.19	AA00
128	3klf_O_DG710_DC711	A-B	AB01	19	0.31	AB01
129	3klf_O_DC711_DC712	BBB	BB00	80	0.29	BB00
130	3klf_O_DC712_DC713	BBB	BB00	75	0.22	BB00
131	3klf_O_DC713_DG714	BBB	BB00	90	0.16	BB00
132	3klf_O_DG714_DA715	B12	BB04	93	0.14	BB04
133	3klf_O_DA715_DA716	BBB	BB00	93	0.13	BB00
134	3klf_O_DA716_DC717	BBB	BB00	24	0.26	BB00
135	3klf_O_DC717_DA718	BBB	BB00	70	0.25	BB00
136	3klf_O_DA718_DG719	BBB	BB00	66	0.20	BB00
137	3klf_O_DG719_DG720	B12	BB04	61	0.20	BB04
138	3klf_O_DG720_DG721	BBB	BB00	73	0.27	BB00
139	3klf_O_DG721_DA722	BBB	BB00	69	0.24	BB00
140	3klf_O_DA722_DC723	miB	BB15	65	0.24	BB15
141	3klf_O_DC723_DT724	BBB	BB00	43	0.31	BB00
142	3klf_O_DT724_DG725	BBB	BB00	26	0.30	BB00
143	3klf_P_DC803_DA804	BBB	BB00	68	0.33	BB00
144	3klf_P_DA804_DG805	BBB	BB00	68	0.26	BB00
145	3klf_P_DG805_DT806	BBw	BB02	61	0.28	BB02
146	3klf_P_DT806_DC807	BBw	BB02	68	0.28	BB02
147	3klf_P_DC807_DC808	BBw	BB02	44	0.40	BB02
148	3klf_P_DC808_DC809	BBB	BB00	54	0.23	BB00
149	3klf_P_DC809_DT810	BBw	BB02	48	0.24	BB02
150	3klf_P_DT810_DG811	BBB	BB00	65	0.28	BB00
151	3klf_P_DG811_DT812	BBB	BB00	87	0.17	BB00
152	3klf_P_DT812_DT813	BBB	BB00	90	0.24	BB00
153	3klf_P_DT813_DC814	BBB	BB00	84	0.16	BB00
154	3klf_P_DC814_DG815	B12	BB04	88	0.21	BB04
155	3klf_P_DG815_DG816	BBB	BB00	66	0.21	BB00
156	3klf_P_DG816_MRG817	BBB	BB00	82	0.29	BB00
157	3klf_P_MRG817_DC818	B-A	BA01	36	0.30	BA01
158	3klf_P_DC818_DG819	AAA	AA00	22	0.27	AA00
159	3klf_P_DG819_DC820	AAA	AA00	38	0.20	AA00
160	3klf_P_DC820_DC821	AAA	AA00	23	0.33	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 160 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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