Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3kk3_P_DG805_DT806 | AAA | AA00 | 12 | 0.37 |
| 02 | 3kk3_P_DT806_DC807 | AAw | AA01 | 18 | 0.33 |
| 03 | 3kk3_P_DC807_DC808 | NAN | NANT | 0 | 0.52 |
| 04 | 3kk3_P_DC808_DC809 | AAA | AA04 | 12 | 0.52 |
| 05 | 3kk3_P_DC809_DT810 | NAN | NANT | 0 | 0.25 |
| 06 | 3kk3_P_DT810_DG811 | NAN | NANT | 0 | 0.38 |
| 07 | 3kk3_P_DG811_DT812 | AAw | AA01 | 20 | 0.25 |
| 08 | 3kk3_P_DT812_DT813 | NAN | NANT | 0 | 0.38 |
| 09 | 3kk3_P_DT813_DC814 | NAN | NANT | 0 | 0.35 |
| 10 | 3kk3_P_DC814_DG815 | NAN | NANT | 0 | 0.48 |
| 11 | 3kk3_P_DG815_DG816 | NAN | NANT | 0 | 0.51 |
| 12 | 3kk3_P_DG816_DG817 | AAA | AA02 | 12 | 0.46 |
| 13 | 3kk3_P_DG817_DC818 | AAA | AA00 | 12 | 0.26 |
| 14 | 3kk3_P_DC818_DG819 | AAA | AA00 | 20 | 0.23 |
| 15 | 3kk3_P_DG819_DC820 | AAA | AA00 | 33 | 0.25 |
| 16 | 3kk3_P_DC820_DC821 | AAA | AA02 | 9 | 0.57 |
| 17 | 3kk3_T_DG703_DG704 | NAN | NANT | 0 | 0.77 |
| 18 | 3kk3_T_DG704_DT705 | NAN | NANT | 0 | 1.76 |
| 19 | 3kk3_T_DT705_DT706 | NAN | NANT | 0 | 0.59 |
| 20 | 3kk3_T_DT706_DG707 | AAA | AA00 | 27 | 0.23 |
| 21 | 3kk3_T_DG707_DG708 | AAA | AA00 | 26 | 0.24 |
| 22 | 3kk3_T_DG708_DC709 | AAA | AA00 | 14 | 0.24 |
| 23 | 3kk3_T_DC709_DG710 | AAA | AA00 | 22 | 0.19 |
| 24 | 3kk3_T_DG710_DC711 | NAN | NANT | 0 | 0.35 |
| 25 | 3kk3_T_DC711_DC712 | AAw | AA01 | 11 | 0.23 |
| 26 | 3kk3_T_DC712_DC713 | NAN | NANT | 0 | 0.43 |
| 27 | 3kk3_T_DC713_DG714 | NAN | NANT | 0 | 0.31 |
| 28 | 3kk3_T_DG714_DA715 | NAN | NANT | 0 | 0.41 |
| 29 | 3kk3_T_DA715_DA716 | NAN | NANT | 0 | 0.46 |
| 30 | 3kk3_T_DA716_DC717 | NAN | NANT | 0 | 0.49 |
| 31 | 3kk3_T_DC717_DA718 | AAA | AA00 | 9 | 0.40 |
| 32 | 3kk3_T_DA718_DG719 | NAN | NANT | 0 | 0.53 |
| 33 | 3kk3_T_DG719_DG720 | NAN | NANT | 0 | 0.43 |
| 34 | 3kk3_T_DG720_DG721 | AAA | AA02 | 29 | 0.31 |
| 35 | 3kk3_T_DG721_DA722 | NAN | NANT | 0 | 0.49 |
| 36 | 3kk3_T_DA722_DC723 | NAN | NANT | 0 | 0.53 |
| 37 | 3kk3_T_DC723_DT724 | NAN | NANT | 0 | 0.86 |
| 38 | 3kk3_T_DT724_DG725 | NAN | NANT | 0 | 0.51 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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