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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013khg_D_DG802_DT803NANNANT01.09 AA06
023khg_D_DT803_DT804miBBB14390.44 BB14
033khg_D_DT804_DG805NANNANT00.36 BB15
043khg_D_DG805_DG806BBBBB00650.25 BB00
053khg_D_DG806_DA807BBBBB00430.18 BB00
063khg_D_DA807_DT808B-ABA05510.28 BA05
073khg_D_DT808_DG809NANNANT00.38 BB15
083khg_D_DG809_DG810B12BB04390.28 BB04
093khg_D_DG810_DT811BBBBB00560.23 BB00
103khg_D_DT811_DA812BBBBB00420.29 BB00
113khg_D_DA812_DG813BBBBB00520.17 BB00
123khg_E_DC901_DT902A-BAB01240.35 AB01
133khg_E_DT902_DA903OPNOP21210.43 OP21
143khg_E_DA903_DA904B-ABA01180.28 BA01
153khg_E_DA904_DC905NANNANT00.34 OP02
163khg_E_DC905_DG906NANNANT00.27 AB2S
173khg_E_DG906_DC907NANNANT00.91 BBS1
183khg_E_DC907_DT908A-BAB05450.24 AB05
193khg_E_DT908_DA909BBBBB00820.21 BB00
203khg_E_DA909_DC910BBBBB01760.18 BB01
213khg_E_DC910_DC911BBBBB00500.25 BB00
223khg_E_DC911_DA912NANNANT00.42 BB10
233khg_E_DA912_DT913miBBB10680.29 BB10
243khg_E_DT913_DC914miBBB10750.28 BB10
253khg_E_DC914_DC915miBBB10600.31 BB10
263khg_E_DC915_DA916NANNANT00.65 BB13
273khg_E_DA916_DA917NANNANT00.37 BB17
283khg_E_DA917_DC918NANNANT00.22 BB10
293khg_E_DC918_DC919NANNANT00.56 BA16
303khg_H_DG1806_DA1807NANNANT00.55 BA05
313khg_H_DA1807_DT1808NANNANT00.68 BB10
323khg_H_DT1808_DG1809NANNANT00.53 AA02
333khg_H_DG1809_DG1810NANNANT00.47 BB10
343khg_H_DG1810_DT1811BBBBB00340.37 BB00
353khg_H_DT1811_DA1812BBBBB01840.24 BB01
363khg_H_DA1812_DG1813BBBBB00570.33 BB00
373khg_J_DC1905_DG1906NANNANT00.66 BB03
383khg_J_DG1906_DC1907NANNANT00.80 AAS1
393khg_J_DC1907_DT1908BBBBB00570.25 BB00
403khg_J_DT1908_DA1909B-ABA08510.39 BA08
413khg_J_DA1909_DC1910A-BAB03820.28 AB03
423khg_J_DC1910_DC1911B12BB04700.27 BB04
433khg_J_DC1911_DA1912BB2BB07330.34 BB07
443khg_J_DA1912_DT1913NANNANT00.41 BB02
453khg_J_DT1913_DC1914NANNANT00.56 BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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