Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E.coli Pol II-abasic DNA binary complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3k5n_T_DT808_DA809 | NAN | NANT | 0 | 0.45 |
| 02 | 3k5n_T_DA809_DC810 | NAN | NANT | 0 | 0.48 |
| 03 | 3k5n_T_DC810_DG811 | NAN | NANT | 0 | 0.60 |
| 04 | 3k5n_T_DG811_DC812 | NAN | NANT | 0 | 0.69 |
| 05 | 3k5n_T_DC812_DT813 | AAA | AA00 | 10 | 0.58 |
| 06 | 3k5n_T_DT813_DA814 | NAN | NANT | 0 | 0.42 |
| 07 | 3k5n_T_DA814_DG815 | NAN | NANT | 0 | 0.33 |
| 08 | 3k5n_T_DG815_DG816 | NAN | NANT | 0 | 0.42 |
| 09 | 3k5n_T_DG816_DC817 | NAN | NANT | 0 | 0.39 |
| 10 | 3k5n_T_DC817_DA818 | NAN | NANT | 0 | 0.98 |
| 11 | 3k5n_T_DA818_DC819 | NAN | NANT | 0 | 0.51 |
| 12 | 3k5n_T_DC819_DA820 | NAN | NANT | 0 | 0.98 |
| 13 | 3k5n_P_DG901_DT902 | NAN | NANT | 0 | 0.65 |
| 14 | 3k5n_P_DT902_DG903 | NAN | NANT | 0 | 0.78 |
| 15 | 3k5n_P_DG903_DC904 | BBw | BB16 | 25 | 0.52 |
| 16 | 3k5n_P_DC904_DC905 | NAN | NANT | 0 | 0.41 |
| 17 | 3k5n_P_DC905_DT906 | NAN | NANT | 0 | 0.41 |
| 18 | 3k5n_P_DT906_DA907 | NAN | NANT | 0 | 0.43 |
| 19 | 3k5n_P_DA907_DG908 | B-A | BA05 | 14 | 0.37 |
| 20 | 3k5n_P_DG908_DC909 | NAN | NANT | 0 | 0.49 |
| 21 | 3k5n_P_DC909_DG910 | NAN | NANT | 0 | 0.48 |
| 22 | 3k5n_P_DG910_DT911 | BBw | BB17 | 20 | 0.47 |
| 23 | 3k5n_P_DT911_DA912 | B-A | BA17 | 41 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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