Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013k58_T_DT802_DA803NANNANT01.18 OP31
023k58_T_DA803_DA804NANNANT01.14 OP17
033k58_T_DA804_DG805AAAAA00540.18 AA00
043k58_T_DG805_DT806A-BAB05390.31 AB05
053k58_T_DT806_DA807BBBBB00730.24 BB00
063k58_T_DA807_DC808BBBBB01580.24 BB01
073k58_T_DC808_DG809BBBBB00300.38 BB00
083k58_T_DG809_DC810BBBBB01660.26 BB01
093k58_T_DC810_DT811BBBBB00330.32 BB00
103k58_T_DT811_DA812BBBBB00720.26 BB00
113k58_T_DA812_DG813BBBBB00480.28 BB00
123k58_T_DG813_DG814BBBBB00150.34 BB00
133k58_T_DG814_DC815B-ABA08710.32 BA08
143k58_T_DC815_DA816A-BAB01710.26 AB01
153k58_T_DA816_DC817BBwBB03250.28 BB03
163k58_T_DC817_DA818NANNANT00.50 BB12
173k58_P_DG901_DT902BBBBB00570.32 BB00
183k58_P_DT902_DG903BBBBB00190.25 BB00
193k58_P_DG903_DC904NANNANT00.36 BB13
203k58_P_DC904_DC905BBBBB00580.37 BB00
213k58_P_DC905_DT906BBBBB00580.21 BB00
223k58_P_DT906_DA907BB2BB07340.46 BB07
233k58_P_DA907_DG908B-ABA05540.33 BA05
243k58_P_DG908_DC909B-ABA05460.30 BA05
253k58_P_DC909_DG910BBBBB01610.23 BB01
263k58_P_DG910_DT911B-ABA05840.32 BA05
273k58_P_DT911_DA912BBBBB00220.38 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N