Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3k57_T_DT802_DA803 | NAN | NANT | 0 | 2.16 |
| 02 | 3k57_T_DA803_DT804 | NAN | NANT | 0 | 1.32 |
| 03 | 3k57_T_DT804_DG805 | AAA | AA00 | 17 | 0.20 |
| 04 | 3k57_T_DG805_DT806 | A-B | AB01 | 19 | 0.36 |
| 05 | 3k57_T_DT806_DA807 | BBB | BB00 | 77 | 0.23 |
| 06 | 3k57_T_DA807_DC808 | BBw | BB02 | 72 | 0.18 |
| 07 | 3k57_T_DC808_DG809 | BBB | BB00 | 72 | 0.31 |
| 08 | 3k57_T_DG809_DC810 | BBB | BB01 | 68 | 0.26 |
| 09 | 3k57_T_DC810_DT811 | BBB | BB00 | 36 | 0.31 |
| 10 | 3k57_T_DT811_DA812 | BBB | BB00 | 78 | 0.25 |
| 11 | 3k57_T_DA812_DG813 | BBB | BB00 | 58 | 0.30 |
| 12 | 3k57_T_DG813_DG814 | BBB | BB00 | 34 | 0.30 |
| 13 | 3k57_T_DG814_DC815 | B12 | BB04 | 34 | 0.22 |
| 14 | 3k57_T_DC815_DA816 | B12 | BB04 | 67 | 0.20 |
| 15 | 3k57_T_DA816_DC817 | BBB | BB01 | 25 | 0.35 |
| 16 | 3k57_T_DC817_DG818 | NAN | NANT | 0 | 0.76 |
| 17 | 3k57_P_DG901_DT902 | BBB | BB00 | 68 | 0.30 |
| 18 | 3k57_P_DT902_DG903 | BBB | BB00 | 31 | 0.15 |
| 19 | 3k57_P_DG903_DC904 | BBB | BB00 | 87 | 0.17 |
| 20 | 3k57_P_DC904_DC905 | B12 | BB04 | 44 | 0.36 |
| 21 | 3k57_P_DC905_DT906 | BBB | BB00 | 82 | 0.16 |
| 22 | 3k57_P_DT906_DA907 | BB2 | BB07 | 50 | 0.40 |
| 23 | 3k57_P_DA907_DG908 | B-A | BA05 | 63 | 0.31 |
| 24 | 3k57_P_DG908_DC909 | BBB | BB00 | 45 | 0.27 |
| 25 | 3k57_P_DC909_DG910 | BBB | BB00 | 61 | 0.18 |
| 26 | 3k57_P_DG910_DT911 | BBB | BB01 | 59 | 0.23 |
| 27 | 3k57_P_DT911_DA912 | BBB | BB00 | 17 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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