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Conformers: ABBIImiBZICOPNSYNN
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Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site B

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013k49_B_C1_C2NANNANT00.88 OP13
023k49_B_C2_U3NANNANT01.01 OP06
033k49_B_U3_G4NANNANT00.62 AA12
043k49_B_G4_U5ICLIC07580.15 IC07
053k49_B_U5_A6AAuAA12420.55 AA12
063k49_B_A6_A7NANNANT00.81 AB1S
073k49_B_A7_A8NANNANT01.30 AA11
083k49_B_A8_U9NANNANT00.47 IC07
093k49_B_U9_A10ICLIC01520.39 IC01
103k49_D_C1_C2NANNANT00.88 OP13
113k49_D_C2_U3NANNANT01.01 OP06
123k49_D_U3_G4NANNANT00.60 AA12
133k49_D_G4_U5ICLIC07460.18 IC07
143k49_D_U5_A6AAuAA12500.54 AA12
153k49_D_A6_A7NANNANT00.80 AB1S
163k49_D_A7_A8NANNANT01.27 AA11
173k49_D_A8_U9NANNANT00.47 IC07
183k49_D_U9_A10ICLIC01300.41 IC01
193k49_F_C1_C2NANNANT00.90 OP13
203k49_F_C2_U3NANNANT01.00 OP06
213k49_F_U3_G4NANNANT00.61 AA12
223k49_F_G4_U5ICLIC07680.13 IC07
233k49_F_U5_A6AAuAA12420.54 AA12
243k49_F_A6_A7NANNANT00.79 AB1S
253k49_F_A7_A8NANNANT01.28 AA11
263k49_F_A8_U9NANNANT00.46 IC07
273k49_F_U9_A10ICLIC01480.41 IC01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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