Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3jrc_C_DA1_DA2 | NAN | NANT | 0 | 0.62 |
| 02 | 3jrc_C_DA2_DA3 | BBB | BB00 | 32 | 0.36 |
| 03 | 3jrc_C_DA3_DT4 | BBB | BB00 | 79 | 0.23 |
| 04 | 3jrc_C_DT4_DT5 | BBB | BB01 | 87 | 0.18 |
| 05 | 3jrc_C_DT5_DT6 | BBB | BB01 | 64 | 0.19 |
| 06 | 3jrc_C_DT6_DG7 | BBB | BB00 | 44 | 0.38 |
| 07 | 3jrc_C_DG7_DT8 | NAN | NANT | 0 | 0.49 |
| 08 | 3jrc_C_DT8_DT9 | A-B | AB04 | 52 | 0.32 |
| 09 | 3jrc_C_DT9_DT10 | BBB | BB00 | 70 | 0.29 |
| 10 | 3jrc_C_DT10_DG11 | BBB | BB00 | 72 | 0.26 |
| 11 | 3jrc_C_DG11_DG12 | B12 | BB04 | 81 | 0.22 |
| 12 | 3jrc_C_DG12_DG13 | BBB | BB00 | 87 | 0.14 |
| 13 | 3jrc_C_DG13_DC14 | NAN | NANT | 0 | 0.29 |
| 14 | 3jrc_C_DC14_DG15 | A-B | AB02 | 49 | 0.26 |
| 15 | 3jrc_C_DG15_DC16 | B12 | BB04 | 69 | 0.25 |
| 16 | 3jrc_C_DC16_DT17 | B-A | BA01 | 23 | 0.32 |
| 17 | 3jrc_C_DT17_DG18 | A-B | AB01 | 60 | 0.19 |
| 18 | 3jrc_C_DG18_DA19 | BBB | BB00 | 73 | 0.17 |
| 19 | 3jrc_C_DA19_DG20 | NAN | NANT | 0 | 0.40 |
| 20 | 3jrc_C_DG20_DC21 | B-A | BA01 | 56 | 0.16 |
| 21 | 3jrc_C_DC21_DA22 | A-B | AB03 | 74 | 0.37 |
| 22 | 3jrc_C_DA22_DA23 | BBB | BB00 | 94 | 0.09 |
| 23 | 3jrc_C_DA23_DA24 | BBB | BB00 | 93 | 0.19 |
| 24 | 3jrc_C_DA24_DT25 | BBB | BB00 | 76 | 0.20 |
| 25 | 3jrc_C_DT25_DT26 | BBB | BB00 | 51 | 0.32 |
| 26 | 3jrc_C_DT26_DT27 | NAN | NANT | 0 | 0.34 |
| 27 | 3jrc_D_DA1_DA2 | BBw | BB02 | 36 | 0.31 |
| 28 | 3jrc_D_DA2_DA3 | BBB | BB00 | 54 | 0.27 |
| 29 | 3jrc_D_DA3_DT4 | B-A | BA05 | 60 | 0.28 |
| 30 | 3jrc_D_DT4_DT5 | BBB | BB01 | 11 | 0.23 |
| 31 | 3jrc_D_DT5_DT6 | B-A | BA08 | 65 | 0.45 |
| 32 | 3jrc_D_DT6_DG7 | BBw | BB16 | 31 | 0.52 |
| 33 | 3jrc_D_DG7_DC8 | BBw | BB02 | 33 | 0.27 |
| 34 | 3jrc_D_DC8_DT9 | BBB | BB00 | 84 | 0.25 |
| 35 | 3jrc_D_DT9_DC10 | NAN | NANT | 0 | 0.30 |
| 36 | 3jrc_D_DC10_DA11 | NAN | NANT | 0 | 0.65 |
| 37 | 3jrc_D_DA11_DG12 | NAN | NANT | 0 | 0.52 |
| 38 | 3jrc_D_DG12_DC13 | A-B | AB02 | 37 | 0.35 |
| 39 | 3jrc_D_DC13_DG14 | NAN | NANT | 0 | 0.29 |
| 40 | 3jrc_D_DG14_DC15 | B12 | BB04 | 12 | 0.20 |
| 41 | 3jrc_D_DC15_DC16 | BBB | BB01 | 77 | 0.20 |
| 42 | 3jrc_D_DC16_DC17 | B-A | BA01 | 18 | 0.30 |
| 43 | 3jrc_D_DC17_DA18 | A-B | AB01 | 66 | 0.18 |
| 44 | 3jrc_D_DA18_DA19 | BBB | BB00 | 75 | 0.16 |
| 45 | 3jrc_D_DA19_DA20 | BBB | BB00 | 91 | 0.13 |
| 46 | 3jrc_D_DA20_DC21 | B-A | BA08 | 86 | 0.34 |
| 47 | 3jrc_D_DC21_DA22 | NAN | NANT | 0 | 0.30 |
| 48 | 3jrc_D_DA22_DA23 | B12 | BB04 | 75 | 0.25 |
| 49 | 3jrc_D_DA23_DA24 | BBB | BB00 | 56 | 0.24 |
| 50 | 3jrc_D_DA24_DT25 | BBw | BB02 | 34 | 0.24 |
| 51 | 3jrc_D_DT25_DT26 | BBB | BB00 | 88 | 0.25 |
| 52 | 3jrc_D_DT26_DT27 | B-A | BA01 | 77 | 0.12 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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