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Conformers: ABBIImiBZICOPNSYNN
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Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013isc_D_DG1_DT2BBBBB01860.21 BB01
023isc_D_DT2_DC3B-ABA05830.30 BA05
033isc_D_DC3_DG4A-BAB03600.24 AB03
043isc_D_DG4_DG5BB2BB07790.19 BB07
053isc_P_DG1_DC2A-BAB01580.28 AB01
063isc_P_DC2_DT3BBBBB00850.15 BB00
073isc_P_DT3_DG4BBBBB00650.23 BB00
083isc_P_DG4_DA5BBBBB00760.31 BB00
093isc_P_DA5_DT6BBBBB00790.18 BB00
103isc_P_DT6_DG7BBBBB00820.17 BB00
113isc_P_DG7_DC8B-ABA05860.10 BA05
123isc_P_DC8_DG9A-BAB01440.30 AB01
133isc_P_DG9_DC10B-ABA01530.23 BA01
143isc_T_DC1_DC2BBBBB00770.36 BB00
153isc_T_DC2_DG3BB2BB07670.26 BB07
163isc_T_DG3_DA4BBBBB00850.24 BB00
173isc_T_DA4_DC5B-ABA05850.17 BA05
183isc_T_DG7_DC8BBBBB00900.18 BB00
193isc_T_DC8_DG9B12BB04720.31 BB04
203isc_T_DG9_DC10BBBBB01750.21 BB01
213isc_T_DC10_DA11BBBBB00590.23 BB00
223isc_T_DA11_DT12B-ABA05850.19 BA05
233isc_T_DT12_DC13BBBBB01480.36 BB01
243isc_T_DC13_DA14BBBBB00800.23 BB00
253isc_T_DA14_DG15BBBBB00870.14 BB00
263isc_T_DG15_DC16BBBBB00810.21 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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