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Conformers: ABBIImiBZICOPNSYNN
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Binary complex of human DNA polymerase beta with a gapped DNA

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013isb_T_DC1_DC2BBBBB00700.38 BB00
023isb_T_DC2_DG3BB2BB07690.24 BB07
033isb_T_DG3_DA4BBBBB00790.24 BB00
043isb_T_DA4_DC5B-ABA05760.17 BA05
053isb_T_DC5_DG6NANNANT01.36 OP21
063isb_T_DG6_DG7B12BB04580.30 BB04
073isb_T_DG7_DC8BBBBB00680.23 BB00
083isb_T_DC8_DG9B12BB04550.33 BB04
093isb_T_DG9_DC10BBBBB01750.24 BB01
103isb_T_DC10_DA11BBBBB00630.24 BB00
113isb_T_DA11_DT12B-ABA05910.18 BA05
123isb_T_DT12_DC13B-ABA05340.52 BA05
133isb_T_DC13_DA14BBBBB00380.25 BB00
143isb_T_DA14_DG15BBBBB00850.16 BB00
153isb_T_DG15_DC16BBBBB00790.23 BB00
163isb_P_DG1_DC2A-BAB01670.26 AB01
173isb_P_DC2_DT3BBBBB00960.10 BB00
183isb_P_DT3_DG4B12BB04200.19 BB04
193isb_P_DG4_DA5BBBBB00590.32 BB00
203isb_P_DA5_DT6BBBBB00840.18 BB00
213isb_P_DT6_DG7BBBBB00910.16 BB00
223isb_P_DG7_DC8B-ABA05880.12 BA05
233isb_P_DC8_DG9BBBBB01360.27 BB01
243isb_P_DG9_DC10B-ABA05720.25 BA05
253isb_D_DG1_DT2BBBBB00800.22 BB00
263isb_D_DT2_DC3B-ABA05580.31 BA05
273isb_D_DC3_DG4A-BAB03740.25 AB03
283isb_D_DG4_DG5BB2BB07610.24 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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