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Conformers: ABBIImiBZICOPNSYNN
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Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1)

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013igl_B_DC1_DG2A-BAB01660.26 AB01
023igl_B_DG2_DG3BBBBB00570.39 BB00
033igl_B_DG3_DG4BBBBB00810.21 BB00
043igl_B_DG4_DC5B12BB04660.27 BB04
053igl_B_DC5_DA6NANNANT00.66 AB2S
063igl_B_DA6_DT7NANNANT00.34 BBS1
073igl_B_DT7_DG8BB2BB07630.39 BB07
083igl_B_DG8_DC9BBBBB00650.25 BB00
093igl_B_DC9_DC10BBBBB00710.25 BB00
103igl_B_DC10_DC11NANNANT01.45 IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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