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Conformers: ABBIImiBZICOPNSYNN
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Karyopherin nuclear state

Results of the assignment of 116 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013icq_D_G1_C2AAwAA01780.25 AA01
0023icq_D_C2_G3AAAAA00380.41 AA00
0033icq_D_G3_G4AAwAA06460.38 AA06
0043icq_D_G4_A5AAwAA01410.30 AA01
0053icq_D_A5_U6AAAAA08830.28 AA08
0063icq_D_U6_U7AAAAA00150.32 AA00
0073icq_D_U7_U8NANNANT00.69 OP11
0083icq_D_U8_A9NANNANT01.19 IC02
0093icq_D_A9_A10NANNANT01.34 AB02
0103icq_D_A10_C11AAAAA00720.24 AA00
0113icq_D_C11_U12AAAAA00640.29 AA00
0123icq_D_U12_C13AAwAA06680.29 AA06
0133icq_D_C13_A14AAwAA01620.33 AA01
0143icq_D_A14_G15AAAAA08740.42 AA08
0153icq_D_G15_U16AAuAA12550.40 AA12
0163icq_D_G18_G19NANNANT00.73 IC01
0173icq_D_G19_G20NANNANT01.16 OP26
0183icq_D_G20_A21NANNANT01.76 OPS1
0193icq_D_A21_G22NANNANT00.65 AA10
0203icq_D_G22_A23NANNANT00.67 AA10
0213icq_D_A23_G24NANNANT00.46 AA03
0223icq_D_G24_C25AAAAA00500.36 AA00
0233icq_D_C25_G26AAAAA00600.26 AA00
0243icq_D_G26_C27NANNANT00.57 AA12
0253icq_D_G42_G43NANNANT00.45 AA11
0263icq_D_G43_A44NANNANT00.54 AA03
0273icq_D_A44_G45NANNANT00.46 AA04
0283icq_D_G45_G46NANNANT01.24 OP07
0293icq_D_G46_U47NANNANT01.30 OP05
0303icq_D_U47_C48NANNANT01.91 OP01
0313icq_D_C48_C49NANNANT01.35 OP05
0323icq_D_C49_U50AAAAA08710.24 AA08
0333icq_D_U50_G51AAAAA08820.21 AA08
0343icq_D_G51_U52AAAAA00750.15 AA00
0353icq_D_U52_G53AAAAA00780.24 AA00
0363icq_D_G53_U54AAAAA00140.28 AA00
0373icq_D_U54_U55AAwAA06170.35 AA06
0383icq_D_U55_C56NANNANT01.08 OP05
0393icq_D_C56_G57NANNANT00.53 AA04
0403icq_D_G57_A58NANNANT01.18 AA07
0413icq_D_A58_U59NANNANT01.26 OP18
0423icq_D_U59_C60AAAAA04680.42 AA04
0433icq_D_C60_C61NANNANT01.56 OP07
0443icq_D_C61_A62AAAAA08710.24 AA08
0453icq_D_A62_C63AAAAA08910.15 AA08
0463icq_D_C63_A64AAAAA00950.13 AA00
0473icq_D_A64_G65AAAAA00530.31 AA00
0483icq_D_G65_A66AAAAA00460.24 AA00
0493icq_D_A66_A67AAAAA00800.13 AA00
0503icq_D_A67_U68AAAAA00820.15 AA00
0513icq_D_U68_U69AAAAA00830.36 AA00
0523icq_D_U69_C70AAAAA00300.41 AA00
0533icq_D_C70_G71AAwAA01870.23 AA01
0543icq_D_G71_C72AAAAA00610.22 AA00
0553icq_D_C72_A73AAAAA00840.13 AA00
0563icq_D_A73_C74AAAAA00920.16 AA00
0573icq_D_C74_C75AAAAA00560.27 AA00
0583icq_D_C75_A76NANNANT00.55 ZZ01
0593icq_E_G1_C2AAwAA01580.29 AA01
0603icq_E_C2_G3AAAAA00340.42 AA00
0613icq_E_G3_G4AAwAA06290.38 AA06
0623icq_E_G4_A5AAwAA01550.30 AA01
0633icq_E_A5_U6AAAAA08800.28 AA08
0643icq_E_U6_U7AAAAA00110.32 AA00
0653icq_E_U7_U8NANNANT00.56 OP11
0663icq_E_U8_A9NANNANT01.14 IC02
0673icq_E_A9_A10NANNANT01.72 BB20
0683icq_E_A10_C11AAAAA00770.21 AA00
0693icq_E_C11_U12AAAAA00240.33 AA00
0703icq_E_U12_C13AAwAA06770.25 AA06
0713icq_E_C13_A14AAwAA01620.33 AA01
0723icq_E_A14_G15AAAAA08300.45 AA08
0733icq_E_G15_U16NANNANT00.76 BB13
0743icq_E_G18_G19NANNANT00.65 IC01
0753icq_E_G19_G20NANNANT01.48 BB14
0763icq_E_G20_A21NANNANT00.56 OP06
0773icq_E_A21_G22NANNANT00.94 BA10
0783icq_E_G22_A23AAwAA01140.62 AA01
0793icq_E_A23_G24AAAAA00240.38 AA00
0803icq_E_G24_C25AAAAA00670.29 AA00
0813icq_E_C25_G26NANNANT00.41 AA04
0823icq_E_G26_C27AAAAA03300.46 AA03
0833icq_E_C27_C28NANNANT00.46 AA00
0843icq_E_G43_A44NANNANT00.41 AA03
0853icq_E_A44_G45AAAAA00510.32 AA00
0863icq_E_G45_G46NANNANT01.20 AA07
0873icq_E_G46_U47NANNANT01.30 OP05
0883icq_E_U47_C48NANNANT01.58 OP06
0893icq_E_C48_C49NANNANT01.29 OP05
0903icq_E_C49_U50AAAAA00770.21 AA00
0913icq_E_U50_G51AAAAA00870.15 AA00
0923icq_E_G51_U52AAAAA00850.17 AA00
0933icq_E_U52_G53AAAAA00880.23 AA00
0943icq_E_G53_U54AAAAA00590.21 AA00
0953icq_E_U54_U55NANNANT00.58 BB02
0963icq_E_U55_C56NANNANT00.82 OP03
0973icq_E_C56_G57AAAAA04600.42 AA04
0983icq_E_G57_A58NANNANT00.62 IC03
0993icq_E_A58_U59NANNANT00.53 OP25
1003icq_E_U59_C60AAAAA04360.41 AA04
1013icq_E_C60_C61NANNANT00.41 OP12
1023icq_E_C61_A62AAAAA08850.18 AA08
1033icq_E_A62_C63AAAAA08890.15 AA08
1043icq_E_C63_A64AAAAA00690.14 AA00
1053icq_E_A64_G65AAAAA00810.28 AA00
1063icq_E_G65_A66AAAAA00700.24 AA00
1073icq_E_A66_A67AAAAA00440.21 AA00
1083icq_E_A67_U68AAAAA00630.20 AA00
1093icq_E_U68_U69AAAAA00750.37 AA00
1103icq_E_U69_C70AAAAA00420.40 AA00
1113icq_E_C70_G71AAwAA01830.23 AA01
1123icq_E_G71_C72AAAAA08820.17 AA08
1133icq_E_C72_A73AAAAA00850.16 AA00
1143icq_E_A73_C74AAAAA00780.12 AA00
1153icq_E_C74_C75AAAAA00780.26 AA00
1163icq_E_C75_A76NANNANT00.58 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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