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Conformers: ABBIImiBZICOPNSYNN
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8-oxoguanine containing RNA polymerase II elongation complex D

Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013i4m_T_DC7_DT8B12BB04620.34 BB04
023i4m_T_DT8_DC9BBBBB00350.52 BB00
033i4m_T_DC9_DA10BBBBB00390.46 BB00
043i4m_T_DA10_DA11NANNANT00.35 BB11
053i4m_T_DA11_DG12BBwBB16330.71 BB16
063i4m_T_DG12_DT13BBwBB17320.36 BB17
073i4m_T_DT13_DA14BBBBB00340.47 BB00
083i4m_T_DA14_DC15BBBBB00230.54 BB00
093i4m_T_DC15_DT16BBwBB11780.37 BB11
103i4m_T_DT16_DT17NANNANT00.57 BB02
113i4m_T_DT17_DA18NANNANT01.12 OP06
123i4m_T_DA18_8OG19NANNANT00.62 AB02
133i4m_T_8OG19_DG20B-ABA1090.55 BA10
143i4m_T_DG20_DC21AAAAA00150.39 AA00
153i4m_T_DC21_DC22AAAAA00150.38 AA00
163i4m_T_DC22_BRU23NANNANT00.54 BA10
173i4m_T_BRU23_DG24NANNANT00.43 AA10
183i4m_T_DG24_DG25AAAAA04190.49 AA04
193i4m_T_DG25_DT26NANNANT00.72 BB16
203i4m_T_DT26_DC27NANNANT00.94 BB04
213i4m_N_DA1_DG2BBwBB17420.33 BB17
223i4m_N_DG2_DT3NANNANT00.68 AB02
233i4m_N_DT3_DA4BB2BB07370.34 BB07
243i4m_N_DA4_DC5BBwBB11750.29 BB11
253i4m_N_DC5_DT6NANNANT00.72 BB16
263i4m_N_DT6_DT7BBBBB00570.41 BB00
273i4m_N_DT7_DG8BBBBB00700.27 BB00
283i4m_N_DG8_DA9BBBBB00290.39 BB00
293i4m_N_DA9_DG10B12BB04630.33 BB04
303i4m_N_DG10_DC11NANNANT00.69 BB04
313i4m_P_U2_U3AAAAA00240.55 AA00
323i4m_P_U3_C4AAAAA00700.23 AA00
333i4m_P_C4_C5AAwAA06610.37 AA06
343i4m_P_C5_A6AAAAA00710.28 AA00
353i4m_P_A6_G7AAAAA00860.18 AA00
363i4m_P_G7_G8AAAAA00670.29 AA00
373i4m_P_G8_C9AAAAA08720.22 AA08
383i4m_P_C9_C10AAwAA01480.34 AA01
393i4m_P_C10_U11NANNANT01.20 OP05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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