Conformers:
ABBIImiBZICOPNSYNN
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Complete RNA polymerase II elongation complex VI
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3hoy_T_DT10_DA11 | BBB | BB00 | 44 | 0.46 |
| 02 | 3hoy_T_DA11_DC12 | BBB | BB00 | 84 | 0.26 |
| 03 | 3hoy_T_DC12_DT13 | BBB | BB00 | 85 | 0.23 |
| 04 | 3hoy_T_DT13_DT14 | BBB | BB00 | 91 | 0.17 |
| 05 | 3hoy_T_DT14_DA15 | NAN | NANT | 0 | 0.47 |
| 06 | 3hoy_T_DA15_DC16 | NAN | NANT | 0 | 0.54 |
| 07 | 3hoy_T_DC16_DG17 | B12 | BB04 | 59 | 0.39 |
| 08 | 3hoy_T_DG17_DC18 | NAN | NANT | 0 | 1.19 |
| 09 | 3hoy_T_DC18_DC19 | BBB | BB00 | 45 | 0.46 |
| 10 | 3hoy_T_DC19_BRU20 | BBB | BB00 | 60 | 0.26 |
| 11 | 3hoy_T_BRU20_DG21 | BBB | BB00 | 52 | 0.32 |
| 12 | 3hoy_T_DG21_DG22 | BBB | BB00 | 42 | 0.43 |
| 13 | 3hoy_T_DG22_DT23 | BBB | BB00 | 49 | 0.39 |
| 14 | 3hoy_T_DT23_DC24 | BBB | BB00 | 81 | 0.23 |
| 15 | 3hoy_T_DC24_DA25 | NAN | NANT | 0 | 0.63 |
| 16 | 3hoy_T_DA25_DT26 | NAN | NANT | 0 | 0.66 |
| 17 | 3hoy_T_DT26_DT27 | NAN | NANT | 0 | 0.42 |
| 18 | 3hoy_T_DT27_DA28 | NAN | NANT | 0 | 0.98 |
| 19 | 3hoy_N_DG1_DA2 | NAN | NANT | 0 | 0.67 |
| 20 | 3hoy_N_DA2_DA3 | BBB | BB00 | 42 | 0.36 |
| 21 | 3hoy_N_DA3_DA4 | B12 | BB04 | 83 | 0.15 |
| 22 | 3hoy_N_DA4_DG5 | B12 | BB04 | 68 | 0.24 |
| 23 | 3hoy_N_DG5_DT6 | NAN | NANT | 0 | 0.46 |
| 24 | 3hoy_N_DT6_DA7 | BBB | BB00 | 10 | 0.61 |
| 25 | 3hoy_P_U1_A2 | AAA | AA00 | 45 | 0.38 |
| 26 | 3hoy_P_A2_A3 | AAw | AA01 | 51 | 0.31 |
| 27 | 3hoy_P_A3_A4 | AAA | AA08 | 85 | 0.33 |
| 28 | 3hoy_P_A4_G5 | AAA | AA00 | 88 | 0.26 |
| 29 | 3hoy_P_G5_A6 | AAA | AA00 | 83 | 0.18 |
| 30 | 3hoy_P_A6_C7 | AAA | AA00 | 49 | 0.29 |
| 31 | 3hoy_P_C7_C8 | AAA | AA04 | 92 | 0.28 |
| 32 | 3hoy_P_C8_A9 | AAA | AA00 | 26 | 0.39 |
| 33 | 3hoy_P_A9_G10 | AAA | AA08 | 76 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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