Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of T. thermophilus Argonaute complexed with DNA guide strand and 19-nt RNA target strand
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3hm9_X_DT1_DG2 | NAN | NANT | 0 | 0.82 |
| 02 | 3hm9_X_DG2_DA3 | B-A | BA05 | 27 | 0.31 |
| 03 | 3hm9_X_DA3_DG4 | AAA | AA00 | 86 | 0.20 |
| 04 | 3hm9_X_DG4_DG5 | AAA | AA08 | 66 | 0.28 |
| 05 | 3hm9_X_DG5_DT6 | A-B | AB05 | 64 | 0.33 |
| 06 | 3hm9_X_DT6_DA7 | BBB | BB00 | 23 | 0.40 |
| 07 | 3hm9_X_DA7_DG8 | NAN | NANT | 0 | 0.61 |
| 08 | 3hm9_X_DG8_DT9 | AAA | AA00 | 71 | 0.28 |
| 09 | 3hm9_X_DT9_DA10 | AAw | AA01 | 49 | 0.24 |
| 10 | 3hm9_X_DA10_DG11 | A-B | AB04 | 50 | 0.35 |
| 11 | 3hm9_X_DG11_DG12 | NAN | NANT | 0 | 0.40 |
| 12 | 3hm9_X_DG12_DT13 | B12 | BB04 | 37 | 0.30 |
| 13 | 3hm9_X_DT13_DT14 | BBB | BB00 | 61 | 0.28 |
| 14 | 3hm9_X_DT14_DG15 | BBB | BB00 | 31 | 0.57 |
| 15 | 3hm9_X_DG15_DT16 | NAN | NANT | 0 | 1.74 |
| 16 | 3hm9_Y_A6_A7 | AAA | AA00 | 46 | 0.24 |
| 17 | 3hm9_Y_A7_C8 | AAw | AA10 | 26 | 0.24 |
| 18 | 3hm9_Y_C8_C9 | AAw | AA10 | 56 | 0.41 |
| 19 | 3hm9_Y_C9_U10 | AAA | AA08 | 48 | 0.37 |
| 20 | 3hm9_Y_U10_A11 | AAA | AA08 | 71 | 0.31 |
| 21 | 3hm9_Y_A11_C12 | NAN | NANT | 0 | 0.34 |
| 22 | 3hm9_Y_C12_U13 | AAA | AA08 | 79 | 0.25 |
| 23 | 3hm9_Y_U13_A14 | AAA | AA08 | 75 | 0.29 |
| 24 | 3hm9_Y_A14_C15 | AAA | AA03 | 91 | 0.13 |
| 25 | 3hm9_Y_C15_C16 | AAw | AA06 | 35 | 0.32 |
| 26 | 3hm9_Y_C16_U17 | AAA | AA08 | 20 | 0.41 |
| 27 | 3hm9_Y_U17_C18 | AAA | AA00 | 44 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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