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Conformers: ABBIImiBZICOPNSYNN
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Ternary complex of human DNA polymerase iota with template U/T and incoming dATP

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013h4b_P_DA867_DG868BBBBB00520.25 BB00
023h4b_P_DG868_DG869BBBBB00570.37 BB00
033h4b_P_DG869_DA870BBwBB02710.32 BB02
043h4b_P_DA870_DC871BBBBB00150.28 BB00
053h4b_P_DC871_DC872BBBBB00150.40 BB00
063h4b_T_DT839_BRU.A840NANNANT01.00 AB02
073h4b_T_DT839_BRU.B840NANNANT01.01 AB02
083h4b_T_BRU.A840_DG841BBBBB00390.43 BB00
093h4b_T_BRU.B840_DG841SYNBBS1370.40 BBS1
103h4b_T_DG841_DG842NANNANT00.51 BB02
113h4b_T_DG842_DG843BBwBB02360.38 BB02
123h4b_T_DG843_DT844BBBBB00390.38 BB00
133h4b_T_DT844_DC845BBBBB00740.17 BB00
143h4b_T_DC845_DC846BBBBB00640.35 BB00
153h4b_T_DC846_DT847BBwBB02820.16 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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