DNATCO v4.1: results

An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	3gs8_A_U.A1_C2	AAA	AA00	76	0.40	AA00
02	3gs8_A_U.B1_C2	NAN	NANT	0	1.07	AA00
03	3gs8_A_C2_C3	AAA	AA00	70	0.24	AA00
04	3gs8_A_C3_C4	AAA	AA00	73	0.29	AA00
05	3gs8_A_G6_U7	NAN	NANT	0	0.45	OPS1
06	3gs8_A_U7_C8	AAA	AA04	23	0.52	AA04
07	3gs8_A_C8_C9	AAA	AA00	78	0.21	AA00
08	3gs8_A_C9_A10	AAA	AA00	80	0.17	AA00
09	3gs8_A_A10_C11	AAA	AA00	93	0.11	AA00
10	3gs8_A_C11_C12	AAw	AA01	60	0.27	AA01
11	3gs8_A_C12_G13	AAA	AA08	87	0.23	AA08
12	3gs8_B_C2_G3	AAA	AA00	84	0.14	AA00
13	3gs8_B_G3_G4	AAA	AA00	62	0.22	AA00
14	3gs8_B_G4_U5	AAw	AA01	41	0.33	AA01
15	3gs8_B_U5_G6	AAA	AA08	60	0.28	AA08
16	3gs8_B_G6_A7	AAA	AA00	62	0.26	AA00
17	3gs8_B_A7_G8	A-B	AB01	18	0.48	AB01
18	3gs8_B_G8_A9	NAN	NANT	0	0.67	OP15
19	3gs8_B_A9_A10	AAA	AA00	61	0.35	AA00
20	3gs8_B_A10_G11	AAA	AA00	77	0.24	AA00
21	3gs8_B_G11_G12	AAA	AA00	84	0.12	AA00
22	3gs8_B_G12_G13	AAA	AA00	88	0.16	AA00
23	3gs8_C_G15_G16	AAA	AA00	85	0.17	AA00
24	3gs8_C_G16_C17	AAA	AA00	93	0.13	AA00
25	3gs8_C_C17_A18	AAA	AA00	86	0.17	AA00
26	3gs8_C_A18_G19	AAA	AA00	91	0.10	AA00
27	3gs8_C_G19_A20	AAA	AA00	79	0.22	AA00
28	3gs8_C_A20_G21	AAA	AA00	87	0.27	AA00
29	3gs8_C_G21_A22	NAN	NANT	0	0.81	AA11
30	3gs8_C_A22_A23	AAA	AA00	46	0.34	AA00
31	3gs8_C_A23_A24	AAA	AA00	68	0.23	AA00
32	3gs8_C_A24_C25	AAA	AA00	89	0.17	AA00
33	3gs8_C_C25_A26	AAA	AA00	88	0.17	AA00
34	3gs8_C_A26_C27	AAA	AA00	82	0.23	AA00
35	3gs8_C_C27_A28	AAA	AA00	92	0.11	AA00
36	3gs8_C_A28_C29	AAA	AA00	92	0.11	AA00
37	3gs8_C_C29_G30	AAA	AA00	84	0.15	AA00
38	3gs8_C_G30_A31	AAw	AA01	44	0.25	AA01
39	3gs8_D_U31_C32	AAA	AA08	62	0.21	AA08
40	3gs8_D_C32_G33	AAA	AA00	70	0.19	AA00
41	3gs8_D_G33_U34	AAA	AA00	74	0.10	AA00
42	3gs8_D_U34_G35	AAA	AA00	90	0.22	AA00
43	3gs8_D_G35_G36	A-B	AB01	53	0.26	AB01
44	3gs8_D_G36_U37	NAN	NANT	0	1.03	OP04
45	3gs8_D_U37_A38	NAN	NANT	0	1.15	OP04
46	3gs8_D_A38_C39	NAN	NANT	0	0.72	OP21
47	3gs8_D_C39_A40	OPN	OP11	70	0.26	OP11
48	3gs8_D_A40_U41	A-B	AB01	11	0.43	AB01
49	3gs8_D_U41_U42	NAN	NANT	0	1.53	BB17
50	3gs8_D_U42_A43	NAN	NANT	0	1.35	OP15
51	3gs8_D_A43_C44	AAA	AA08	14	0.50	AA08
52	3gs8_D_C44_C45	AAA	AA00	85	0.17	AA00
53	3gs8_D_C45_U46	AAA	AA00	79	0.11	AA00
54	3gs8_D_U46_G47	AAA	AA00	88	0.14	AA00
55	3gs8_D_G47_C48	AAA	AA00	91	0.12	AA00
56	3gs8_D_C48_C49	A-B	AB05	18	0.34	AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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