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Conformers: ABBIImiBZICOPNSYNN
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An all-RNA Hairpin Ribozyme with mutation A38N1dA

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013gs1_A_U.A-5_C-4AAAAA08740.35 AA08
023gs1_A_U.B-5_C-4NANNANT00.89 AA08
033gs1_A_C-4_C-3AAAAA00510.28 AA00
043gs1_A_C-3_C-2AAwAA05130.65 AA05
053gs1_A_C-2_A-1AAAAA08430.61 AA08
063gs1_A_A-1_G1NANNANT02.27 OP17
073gs1_A_G1_U2NANNANT00.40 OPS1
083gs1_A_U2_C3AAAAA00590.34 AA00
093gs1_A_C3_C4AAAAA00610.30 AA00
103gs1_A_C4_A5AAAAA00660.20 AA00
113gs1_A_A5_C6AAAAA00970.10 AA00
123gs1_A_C6_C7AAAAA00720.25 AA00
133gs1_A_C7_G8AAAAA00860.14 AA00
143gs1_B_C2_G3AAAAA00860.19 AA00
153gs1_B_G3_G4NANNANT00.43 AA03
163gs1_B_G4_U5AAwAA01450.37 AA01
173gs1_B_U5_G6AAAAA08750.20 AA08
183gs1_B_G6_A7AAAAA00880.15 AA00
193gs1_B_A7_G8A-BAB0470.58 AB04
203gs1_B_G8_A9NANNANT00.42 AA12
213gs1_B_A9_A10AAAAA08720.24 AA08
223gs1_B_A10_G11AAAAA00620.27 AA00
233gs1_B_G11_G12AAAAA00880.14 AA00
243gs1_B_G12_G13AAAAA00960.18 AA00
253gs1_C_G15_G16AAAAA00810.20 AA00
263gs1_C_G16_C17AAAAA00870.09 AA00
273gs1_C_C17_A18AAAAA00920.16 AA00
283gs1_C_A18_G19AAAAA00930.20 AA00
293gs1_C_G19_A20AAAAA00790.24 AA00
303gs1_C_A20_G21AAAAA00740.37 AA00
313gs1_C_G21_A22NANNANT00.88 AA11
323gs1_C_A22_A23AAAAA08730.28 AA08
333gs1_C_A23_A24AAAAA00680.28 AA00
343gs1_C_A24_C25AAAAA00920.18 AA00
353gs1_C_C25_A26AAAAA00920.13 AA00
363gs1_C_A26_C27AAAAA00900.20 AA00
373gs1_C_C27_A28AAAAA00960.13 AA00
383gs1_C_A28_C29AAAAA00870.14 AA00
393gs1_C_C29_G30AAAAA00940.09 AA00
403gs1_C_G30_A31AAAAA00760.20 AA00
413gs1_D_U31_C32AAAAA00820.13 AA00
423gs1_D_C32_G33AAAAA00760.17 AA00
433gs1_D_G33_U34AAAAA00750.16 AA00
443gs1_D_U34_G35AAAAA00940.18 AA00
453gs1_D_G35_G36A-BAB01650.24 AB01
463gs1_D_G36_U37NANNANT00.99 OP04
473gs1_D_U37_A38NANNANT01.17 OP04
483gs1_D_A38_C39NANNANT01.36 OP18
493gs1_D_C39_A40OPNOP11910.19 OP11
503gs1_D_A40_U41A-BAB01210.42 AB01
513gs1_D_U41_U42NANNANT01.45 BB17
523gs1_D_U42_A43NANNANT01.36 OP15
533gs1_D_A43_C44AAAAA08310.49 AA08
543gs1_D_C44_C45AAAAA00880.14 AA00
553gs1_D_C45_U46AAAAA00900.14 AA00
563gs1_D_U46_G47AAAAA00920.12 AA00
573gs1_D_G47_C48AAAAA00700.17 AA00
583gs1_D_C48_C49AAAAA00820.13 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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