Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the RAG1 nonamer-binding domain with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3gna_D_DC.A2_DT.A3 | AAA | AA00 | 59 | 0.32 |
| 02 | 3gna_D_DT.A3_DT.A4 | AAA | AA00 | 72 | 0.25 |
| 03 | 3gna_D_DT.A4_DA.A5 | A-B | AB01 | 12 | 0.23 |
| 04 | 3gna_D_DA.A5_DA.A6 | BBB | BB00 | 41 | 0.21 |
| 05 | 3gna_D_DA.A6_DC.A7 | BBB | BB01 | 85 | 0.16 |
| 06 | 3gna_D_DC.A7_DA.A8 | BBw | BB02 | 39 | 0.24 |
| 07 | 3gna_D_DA.A8_DA.A9 | BBB | BB00 | 67 | 0.31 |
| 08 | 3gna_D_DA.A9_DA.A10 | B12 | BB04 | 69 | 0.20 |
| 09 | 3gna_D_DA.A10_DA.A11 | miB | BB10 | 80 | 0.20 |
| 10 | 3gna_D_DA.A11_DA.A12 | BBB | BB00 | 26 | 0.25 |
| 11 | 3gna_D_DA.A12_DC.A13 | NAN | NANT | 0 | 0.49 |
| 12 | 3gna_D_DC.A13_DC.A14 | NAN | NANT | 0 | 0.44 |
| 13 | 3gna_E_DG.B2_DG.B3 | AAA | AA00 | 72 | 0.24 |
| 14 | 3gna_E_DG.B3_DT.B4 | AAA | AA00 | 66 | 0.26 |
| 15 | 3gna_E_DT.B4_DT.B5 | A-B | AB01 | 78 | 0.22 |
| 16 | 3gna_E_DT.B5_DT.B6 | BBB | BB00 | 94 | 0.14 |
| 17 | 3gna_E_DT.B6_DT.B7 | B-A | BA05 | 69 | 0.18 |
| 18 | 3gna_E_DT.B7_DT.B8 | NAN | NANT | 0 | 0.41 |
| 19 | 3gna_E_DT.B8_DG.B9 | NAN | NANT | 0 | 0.26 |
| 20 | 3gna_E_DG.B9_DT.B10 | BBB | BB00 | 56 | 0.26 |
| 21 | 3gna_E_DT.B10_DT.B11 | miB | BB10 | 69 | 0.28 |
| 22 | 3gna_E_DT.B11_DA.B12 | BBB | BB01 | 53 | 0.20 |
| 23 | 3gna_E_DA.B12_DA.B13 | NAN | NANT | 0 | 0.47 |
| 24 | 3gna_E_DA.B13_DG.B14 | NAN | NANT | 0 | 0.53 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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