Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3gik_D_DG1_DT2 | NAN | NANT | 0 | 0.81 |
| 02 | 3gik_D_DT2_DT3 | NAN | NANT | 0 | 0.34 |
| 03 | 3gik_D_DT3_DG4 | BBB | BB00 | 12 | 0.29 |
| 04 | 3gik_D_DG4_DG5 | BBB | BB00 | 12 | 0.33 |
| 05 | 3gik_D_DG5_DA6 | NAN | NANT | 0 | 0.37 |
| 06 | 3gik_D_DA6_DT7 | NAN | NANT | 0 | 0.36 |
| 07 | 3gik_D_DT7_DG8 | A-B | AB03 | 17 | 0.33 |
| 08 | 3gik_D_DG8_DG9 | miB | BB15 | 30 | 0.45 |
| 09 | 3gik_D_DG9_DT10 | BBB | BB00 | 69 | 0.26 |
| 10 | 3gik_D_DT10_DA11 | NAN | NANT | 0 | 0.33 |
| 11 | 3gik_D_DA11_DG12 | BBB | BB00 | 28 | 0.33 |
| 12 | 3gik_E_DC901_DT902 | AAA | AA09 | 82 | 0.26 |
| 13 | 3gik_E_DT902_DA903 | NAN | NANT | 0 | 1.85 |
| 14 | 3gik_E_DA903_DA904 | B-A | BA01 | 13 | 0.37 |
| 15 | 3gik_E_DA904_DC905 | NAN | NANT | 0 | 0.67 |
| 16 | 3gik_E_DC905_8OG906 | NAN | NANT | 0 | 0.47 |
| 17 | 3gik_E_8OG906_DC907 | NAN | NANT | 0 | 0.69 |
| 18 | 3gik_E_DC907_DT908 | A-B | AB03 | 38 | 0.40 |
| 19 | 3gik_E_DT908_DA909 | BBB | BB00 | 37 | 0.23 |
| 20 | 3gik_E_DA909_DC910 | B-A | BA08 | 58 | 0.41 |
| 21 | 3gik_E_DC910_DC911 | A-B | AB01 | 23 | 0.35 |
| 22 | 3gik_E_DC911_DA912 | BBw | BB17 | 58 | 0.38 |
| 23 | 3gik_E_DA912_DT913 | NAN | NANT | 0 | 0.32 |
| 24 | 3gik_E_DT913_DC914 | miB | BB14 | 68 | 0.24 |
| 25 | 3gik_E_DC914_DC915 | BBw | BB17 | 24 | 0.39 |
| 26 | 3gik_E_DC915_DA916 | BBB | BB00 | 22 | 0.49 |
| 27 | 3gik_E_DA916_DA917 | BBw | BB17 | 67 | 0.36 |
| 28 | 3gik_E_DA917_DC918 | BBB | BB00 | 12 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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